Resource
| Id | TF_ChIP-seq/ENCSR000BSV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BSV [biosample_summary="Homo sapiens SK-N-SH" and target="NFIC"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN272YMO|/analyses/ENCAN272YMO/} has in progress subobject document {ec9c2509-773c-4002-91ab-4b84ceaf3483|/documents/ec9c2509-773c-4002-91ab-4b84ceaf3483/} audit_internal_action: Released analysis {ENCAN272YMO|/analyses/ENCAN272YMO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF749DWZ|/files/ENCFF749DWZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF965AKM|/files/ENCFF965AKM/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BSV | float |
TF_ChIP-seq_ENCSR000BSV |
TF_ChIP-seq ENCSR000BSV [biosample_summary="Homo sapiens SK-N-SH" and target="NFIC"]
|
 |
[5.82, 465] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12558067 | 0.39% | 42201 |
| chr1 | 1245002 | 0.50% | 4155 |
| chr2 | 1157304 | 0.48% | 3886 |
| chr3 | 913240 | 0.46% | 3049 |
| chr4 | 669496 | 0.35% | 2254 |
| chr5 | 805964 | 0.44% | 2746 |
| chr6 | 716561 | 0.42% | 2399 |
| chr7 | 829440 | 0.52% | 2782 |
| chr8 | 559606 | 0.39% | 1902 |
| chr9 | 555160 | 0.40% | 1872 |
| chr10 | 635647 | 0.48% | 2131 |
| chr11 | 629412 | 0.47% | 2101 |
| chr12 | 619188 | 0.46% | 2087 |
| chr13 | 351557 | 0.31% | 1171 |
| chr14 | 343009 | 0.32% | 1150 |
| chr15 | 413377 | 0.41% | 1391 |
| chr16 | 303941 | 0.34% | 1026 |
| chr17 | 535721 | 0.64% | 1812 |
| chr18 | 249363 | 0.31% | 858 |
| chr19 | 241696 | 0.41% | 812 |
| chr20 | 283574 | 0.44% | 957 |
| chr21 | 111121 | 0.24% | 374 |
| chr22 | 152284 | 0.30% | 508 |
| chrX | 236404 | 0.15% | 778 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 42201 | 1 | 704 | 297.58 | 356 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF749DWZ.bed.gz | 677.89 KB | 207edb94d5b6ebad31806f6105766a7d |
| ENCFF749DWZ.tabix.bed.gz | 490.03 KB | 3f9dbcdfed2c9537fc17ea745c4e61e3 |
| ENCFF749DWZ.tabix.bed.gz.tbi | 219.31 KB | c1ebef244904cf89afec137e17904565 |
| genomic_resource.yaml | 2.64 KB | 4eb4b01d8cf99fcc6639f2f6ba7ac5b6 |
| statistics/ |