type: position_score
table:
  filename: ENCFF749DWZ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BSV
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000BSV [biosample_summary="Homo sapiens SK-N-SH" and target="NFIC"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000BSV [biosample_summary="Homo sapiens SK-N-SH" and target="NFIC"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN272YMO|/analyses/ENCAN272YMO/} has in progress\
    \ subobject document {ec9c2509-773c-4002-91ab-4b84ceaf3483|/documents/ec9c2509-773c-4002-91ab-4b84ceaf3483/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN272YMO|/analyses/ENCAN272YMO/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF749DWZ|/files/ENCFF749DWZ/} processed by ChIP-seq\
    \ ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency\
    \ ratio of 2.11. According to ENCODE standards, having both rescue ratio and self\
    \ consistency ratio values < 2 is recommended, but having only one of the ratio\
    \ values < 2 is acceptable.\n\n**audit\\_warning**: Replicate concordance in ChIP-seq\
    \ experiments is measured by calculating IDR values (Irreproducible Discovery\
    \ Rate). ENCODE processed IDR thresholded peaks files {ENCFF965AKM|/files/ENCFF965AKM/}\
    \ processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of\
    \ 1.28 and a self consistency ratio of 2.11. According to ENCODE standards, having\
    \ both rescue ratio and self consistency ratio values < 2 is recommended, but\
    \ having only one of the ratio values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BSV
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens SK-N-SH
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0003072/
    perturbed: false
    doi: 10.17989/ENCSR000BSV
    date_created: '2013-09-13T15:57:28.699830-08:00'
    date_released: '2012-09-10'
    submitter_comment: ''
    target: NFIC