Resource
| Id | Histone_ChIP-seq/ENCSR817PGE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR817PGE [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (90 or above years) with Alzheimer's disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN343VET|/analyses/ENCAN343VET/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF126WHD|/files/ENCFF126WHD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 29926753 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR817PGE | float |
Histone_ChIP-seq_ENCSR817PGE |
Histone_ChIP-seq ENCSR817PGE [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]
|
 |
[1.54, 12.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 111856436 | 3.48% | 98128 |
| chr1 | 4290014 | 1.72% | 4113 |
| chr2 | 3628135 | 1.50% | 3636 |
| chr3 | 1353127 | 0.68% | 1388 |
| chr4 | 1844122 | 0.97% | 1710 |
| chr5 | 2640168 | 1.45% | 2367 |
| chr6 | 3107674 | 1.82% | 2565 |
| chr7 | 2489011 | 1.56% | 2205 |
| chr8 | 2226554 | 1.53% | 2260 |
| chr9 | 1641299 | 1.19% | 1494 |
| chr10 | 3350412 | 2.50% | 3219 |
| chr11 | 2084699 | 1.54% | 2076 |
| chr12 | 2489409 | 1.87% | 2228 |
| chr13 | 1165664 | 1.02% | 1111 |
| chr14 | 2644884 | 2.47% | 2291 |
| chr15 | 2296188 | 2.25% | 2356 |
| chr16 | 2593659 | 2.87% | 2503 |
| chr17 | 3137224 | 3.77% | 2568 |
| chr18 | 1077259 | 1.34% | 1182 |
| chr19 | 2539788 | 4.33% | 2255 |
| chr20 | 2343118 | 3.64% | 2316 |
| chr21 | 1057064 | 2.26% | 1108 |
| chr22 | 1149662 | 2.26% | 1244 |
| chrX | 60705367 | 38.90% | 49928 |
| chrY | 1935 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 98128 | 200 | 57195 | 1139.9 | 773 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF221SKL.bed.gz | 1.86 MB | 8abde4d084c64b9e7e0b543f1418c2e5 |
| ENCFF221SKL.tabix.bed.gz | 962.38 KB | f45deac47f7a4d6048ed7bf54a7002ac |
| ENCFF221SKL.tabix.bed.gz.tbi | 169.73 KB | 86dc43ab2c6b29d06d348196e730307c |
| genomic_resource.yaml | 2.24 KB | 2b13b106525dc0bded198517c7836b63 |
| statistics/ |