type: position_score
table:
  filename: ENCFF221SKL.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR817PGE
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR817PGE [biosample_summary="Homo sapiens with Alzheimer''''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR817PGE [biosample_summary="Homo sapiens with Alzheimer''''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27me3"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female adult (90 or above years) with Alzheimer''s disease


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN343VET|/analyses/ENCAN343VET/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF126WHD|/files/ENCFF126WHD/}
    processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 29926753 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR817PGE
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
    biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal
      cortex tissue female adult (90 or above years)
    replication_type: isogenic
    biosample_ontology: /biosample-types/tissue_UBERON_0009834/
    perturbed: false
    doi: 10.17989/ENCSR817PGE
    date_created: '2022-05-11T01:54:51.964960+00:00'
    date_released: '2022-06-09'
    submitter_comment: ''
    target: H3K27me3