Resource
| Id | Histone_ChIP-seq/ENCSR555QHZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR555QHZ [biosample_summary="Homo sapiens mesenchymal stem cell female adult and female adult (41 years) and female adult (59 years), originated from adipose tissue" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 2, Rep 3 summary: female adult (41 years) female adult female adult (59 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN903YLV|/analyses/ENCAN903YLV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF807JAJ|/files/ENCFF807JAJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 29424957 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF938YTI|/files/ENCFF938YTI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 29175536 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR555QHZ | float |
Histone_ChIP-seq_ENCSR555QHZ |
Histone_ChIP-seq ENCSR555QHZ [biosample_summary="Homo sapiens mesenchymal stem cell female adult and female adult (41 years) and female adult (59 years), originated from adipose tissue" and target="H3K36me3"]
|
 |
[1.61, 28.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 204593259 | 6.36% | 173870 |
| chr1 | 20000132 | 8.03% | 16868 |
| chr2 | 16996271 | 7.02% | 14034 |
| chr3 | 13846241 | 6.98% | 11718 |
| chr4 | 9371894 | 4.93% | 8068 |
| chr5 | 11041874 | 6.08% | 8984 |
| chr6 | 10192959 | 5.97% | 8826 |
| chr7 | 9552449 | 5.99% | 8583 |
| chr8 | 7967091 | 5.49% | 6844 |
| chr9 | 9245460 | 6.68% | 7668 |
| chr10 | 9781443 | 7.31% | 8172 |
| chr11 | 10279093 | 7.61% | 8168 |
| chr12 | 10884819 | 8.17% | 9181 |
| chr13 | 4828403 | 4.22% | 4374 |
| chr14 | 6982270 | 6.52% | 5929 |
| chr15 | 8161368 | 8.00% | 6751 |
| chr16 | 7455163 | 8.25% | 6306 |
| chr17 | 9820588 | 11.80% | 8364 |
| chr18 | 4093760 | 5.09% | 3700 |
| chr19 | 8346968 | 14.24% | 7416 |
| chr20 | 5332424 | 8.27% | 4444 |
| chr21 | 2482759 | 5.32% | 1906 |
| chr22 | 4139531 | 8.15% | 3538 |
| chrX | 3790299 | 2.43% | 4028 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 173870 | 190 | 37799 | 1176.7 | 735 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF192ZDF.bed.gz | 3.96 MB | d0817733197b80c4975b5eec44691d09 |
| ENCFF192ZDF.tabix.bed.gz | 1.76 MB | ac9bdd6c9b14152cc21b5d23a88e7b73 |
| ENCFF192ZDF.tabix.bed.gz.tbi | 177.56 KB | 7c47c903904875b700f99c8be782f592 |
| genomic_resource.yaml | 2.95 KB | d06483d046e1e3cd424de373648742f3 |
| statistics/ |