Resource
| Id | Histone_ChIP-seq/ENCSR539TKY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR539TKY [biosample_summary="Homo sapiens KMS-11" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN755SSP|/analyses/ENCAN755SSP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN755SSP|/analyses/ENCAN755SSP/} has in progress subobject document {1f959b05-4769-47f5-a053-6c02c0a78eee|/documents/1f959b05-4769-47f5-a053-6c02c0a78eee/} audit_not_compliant: Processed alignments file {ENCFF867DKI|/files/ENCFF867DKI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 7597024 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF790PIQ|/files/ENCFF790PIQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18110245 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR539TKY | float |
Histone_ChIP-seq_ENCSR539TKY |
Histone_ChIP-seq ENCSR539TKY [biosample_summary="Homo sapiens KMS-11" and target="H3K4me3"]
|
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[6.62, 165] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7856670 | 0.24% | 15231 |
| chr1 | 2478786 | 1.00% | 4711 |
| chr2 | 1510948 | 0.62% | 3200 |
| chr3 | 1096345 | 0.55% | 2274 |
| chr4 | 482583 | 0.25% | 1026 |
| chr5 | 145531 | 0.08% | 248 |
| chr6 | 145875 | 0.09% | 227 |
| chr7 | 286579 | 0.18% | 542 |
| chr8 | 153503 | 0.11% | 289 |
| chr9 | 100269 | 0.07% | 162 |
| chr10 | 132053 | 0.10% | 198 |
| chr11 | 124280 | 0.09% | 217 |
| chr12 | 239243 | 0.18% | 500 |
| chr13 | 11493 | 0.01% | 17 |
| chr14 | 24647 | 0.02% | 39 |
| chr15 | 82581 | 0.08% | 130 |
| chr16 | 144646 | 0.16% | 248 |
| chr17 | 209777 | 0.25% | 343 |
| chr18 | 97599 | 0.12% | 204 |
| chr19 | 174224 | 0.30% | 302 |
| chr20 | 88172 | 0.14% | 153 |
| chr21 | 47713 | 0.10% | 71 |
| chr22 | 57700 | 0.11% | 99 |
| chrX | 22123 | 0.01% | 31 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 15231 | 1 | 5368 | 515.83 | 419 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF410ORL.bed.gz | 231.12 KB | e2e7f45a0501a1536ba6bffb406851a7 |
| ENCFF410ORL.tabix.bed.gz | 174.24 KB | 29a5e215186398027196ba3fe72982a7 |
| ENCFF410ORL.tabix.bed.gz.tbi | 60.85 KB | e875dc7bea15dd4fa5802e581ec0b37b |
| genomic_resource.yaml | 2.75 KB | 6a9d05980b08a5bbeff0bf506a71a9c2 |
| statistics/ |
