Resource

Id Histone_ChIP-seq/ENCSR539TKYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR539TKY [biosample_summary="Homo sapiens KMS-11" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR539TKY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005694/
  • biosample_summary: Homo sapiens KMS-11
  • date_created: 2016-10-11T13:25:54.592720+00:00
  • date_released: 2017-01-15
  • doi: 10.17989/ENCSR539TKY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: As of December 4, 2017, old processed files have been revoked and new processed files (using the proper control alignments) have been released.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR539TKY float

Histone_ChIP-seq_ENCSR539TKY

Histone_ChIP-seq ENCSR539TKY [biosample_summary="Homo sapiens KMS-11" and target="H3K4me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR539TKY [6.62, 165]
n
7,856,670
mean
34.9
sd
16.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78566700.24% 15231
chr1 2478786 1.00% 4711
chr2 1510948 0.62% 3200
chr3 1096345 0.55% 2274
chr4 482583 0.25% 1026
chr5 145531 0.08% 248
chr6 145875 0.09% 227
chr7 286579 0.18% 542
chr8 153503 0.11% 289
chr9 100269 0.07% 162
chr10 132053 0.10% 198
chr11 124280 0.09% 217
chr12 239243 0.18% 500
chr13 11493 0.01% 17
chr14 24647 0.02% 39
chr15 82581 0.08% 130
chr16 144646 0.16% 248
chr17 209777 0.25% 343
chr18 97599 0.12% 204
chr19 174224 0.30% 302
chr20 88172 0.14% 153
chr21 47713 0.10% 71
chr22 57700 0.11% 99
chrX 22123 0.01% 31
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 15231 1 5368 515.83 419
global segment-length histogram

Files

Filename Size md5
ENCFF410ORL.bed.gz 231.12 KB e2e7f45a0501a1536ba6bffb406851a7
ENCFF410ORL.tabix.bed.gz 174.24 KB 29a5e215186398027196ba3fe72982a7
ENCFF410ORL.tabix.bed.gz.tbi 60.85 KB e875dc7bea15dd4fa5802e581ec0b37b
genomic_resource.yaml 2.75 KB 6a9d05980b08a5bbeff0bf506a71a9c2
statistics/