type: position_score
table:
  filename: ENCFF410ORL.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR539TKY
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR539TKY [biosample_summary="Homo sapiens KMS-11" and target="H3K4me3"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR539TKY [biosample_summary="Homo sapiens KMS-11" and target="H3K4me3"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN755SSP|/analyses/ENCAN755SSP/} has in progress\
    \ subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN755SSP|/analyses/ENCAN755SSP/}\
    \ has in progress subobject document {1f959b05-4769-47f5-a053-6c02c0a78eee|/documents/1f959b05-4769-47f5-a053-6c02c0a78eee/}\n\
    \n**audit\\_not\\_compliant**: Processed alignments file {ENCFF867DKI|/files/ENCFF867DKI/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 7597024 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ H3K4me3-human and investigated as a narrow histone mark is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/})\n\n**audit\\\
    _warning**: Processed alignments file {ENCFF790PIQ|/files/ENCFF790PIQ/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18110245 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ H3K4me3-human and investigated as a narrow histone mark is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/})"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR539TKY
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens KMS-11
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0005694/
    perturbed: false
    doi: 10.17989/ENCSR539TKY
    date_created: '2016-10-11T13:25:54.592720+00:00'
    date_released: '2017-01-15'
    submitter_comment: As of December 4, 2017, old processed files have been revoked
      and new processed files (using the proper control alignments) have been released.
    target: H3K4me3