Resource
| Id | Histone_ChIP-seq/ENCSR000FCK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000FCK [biosample_summary="Homo sapiens HEK293" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN538ZHM|/analyses/ENCAN538ZHM/} has deleted subobject file {ENCFF816VSK|/files/ENCFF816VSK/} audit_internal_action: Archived analysis {ENCAN538ZHM|/analyses/ENCAN538ZHM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_internal_action: Archived analysis {ENCAN538ZHM|/analyses/ENCAN538ZHM/} has deleted subobject file {ENCFF385LDM|/files/ENCFF385LDM/} audit_not_compliant: Processed alignments file {ENCFF894ZZY|/files/ENCFF894ZZY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10844630 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF539DTI|/files/ENCFF539DTI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22172437 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000FCK | float |
Histone_ChIP-seq_ENCSR000FCK |
Histone_ChIP-seq ENCSR000FCK [biosample_summary="Homo sapiens HEK293" and target="H3K36me3"]
|
 |
[1.83, 22.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25652963 | 0.80% | 44610 |
| chr1 | 2604954 | 1.05% | 4488 |
| chr2 | 2486434 | 1.03% | 4533 |
| chr3 | 624700 | 0.32% | 1316 |
| chr4 | 316089 | 0.17% | 743 |
| chr5 | 2357896 | 1.30% | 3839 |
| chr6 | 1417637 | 0.83% | 2472 |
| chr7 | 887199 | 0.56% | 1683 |
| chr8 | 242131 | 0.17% | 543 |
| chr9 | 396316 | 0.29% | 884 |
| chr10 | 1456295 | 1.09% | 2525 |
| chr11 | 317618 | 0.24% | 706 |
| chr12 | 1683493 | 1.26% | 3015 |
| chr13 | 248353 | 0.22% | 525 |
| chr14 | 1344581 | 1.26% | 2366 |
| chr15 | 1042230 | 1.02% | 1745 |
| chr16 | 366986 | 0.41% | 771 |
| chr17 | 2652272 | 3.19% | 4143 |
| chr18 | 738802 | 0.92% | 1287 |
| chr19 | 2116840 | 3.61% | 2837 |
| chr20 | 353388 | 0.55% | 726 |
| chr21 | 449434 | 0.96% | 715 |
| chr22 | 503289 | 0.99% | 889 |
| chrX | 1046026 | 0.67% | 1859 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 44610 | 215 | 8214 | 575.05 | 455 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF498VVY.bed.gz | 848.77 KB | c05be789bf435a3131e97347870402b8 |
| ENCFF498VVY.tabix.bed.gz | 435.64 KB | 1e2562a2c56147b8045bf6e319538cbd |
| ENCFF498VVY.tabix.bed.gz.tbi | 113.25 KB | f3a54cd8fabdd1ec19be238ef8291da0 |
| genomic_resource.yaml | 2.75 KB | 64d77d11f1bd18383f7398979ab22e54 |
| statistics/ |