Resource
| Id | Histone_ChIP-seq/ENCSR000DQK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DQK [biosample_summary="Homo sapiens Caco-2" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN869USG|/analyses/ENCAN869USG/} has in progress subobject document {6cd25096-02e2-43be-aafa-4869d30fbc99|/documents/6cd25096-02e2-43be-aafa-4869d30fbc99/} audit_internal_action: Released analysis {ENCAN869USG|/analyses/ENCAN869USG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF788XRD|/files/ENCFF788XRD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 11686535 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF691XDC|/files/ENCFF691XDC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 11573700 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DQK | float |
Histone_ChIP-seq_ENCSR000DQK |
Histone_ChIP-seq ENCSR000DQK [biosample_summary="Homo sapiens Caco-2" and target="H3K36me3"]
|
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[1.86, 10.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6715717 | 0.21% | 31714 |
| chr1 | 339687 | 0.14% | 1716 |
| chr2 | 457091 | 0.19% | 2236 |
| chr3 | 284659 | 0.14% | 1478 |
| chr4 | 95213 | 0.05% | 503 |
| chr5 | 319726 | 0.18% | 1570 |
| chr6 | 225150 | 0.13% | 1157 |
| chr7 | 330762 | 0.21% | 1625 |
| chr8 | 128248 | 0.09% | 664 |
| chr9 | 191959 | 0.14% | 958 |
| chr10 | 478376 | 0.36% | 2274 |
| chr11 | 756604 | 0.56% | 3290 |
| chr12 | 366902 | 0.28% | 1770 |
| chr13 | 145603 | 0.13% | 748 |
| chr14 | 120995 | 0.11% | 625 |
| chr15 | 123832 | 0.12% | 633 |
| chr16 | 388835 | 0.43% | 1797 |
| chr17 | 486877 | 0.58% | 2234 |
| chr18 | 44036 | 0.05% | 232 |
| chr19 | 528221 | 0.90% | 2304 |
| chr20 | 678122 | 1.05% | 2753 |
| chr21 | 38863 | 0.08% | 205 |
| chr22 | 152987 | 0.30% | 766 |
| chrX | 32969 | 0.02% | 176 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31714 | 113 | 4912 | 211.76 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF479TQU.bed.gz | 563.66 KB | c84b20c915299cd52b2f15c9625495e9 |
| ENCFF479TQU.tabix.bed.gz | 300.76 KB | d170909c987cae8598ce78fb4965e88b |
| ENCFF479TQU.tabix.bed.gz.tbi | 116.23 KB | 3157d4f466922e8cc5f8385b0a7ef874 |
| genomic_resource.yaml | 2.91 KB | c905fc6a438856fa25c40e74b26e29bb |
| statistics/ |
