Resource

Id Histone_ChIP-seq/ENCSR000DQKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000DQK [biosample_summary="Homo sapiens Caco-2" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR000DQK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001099/
  • biosample_summary: Homo sapiens Caco-2
  • date_created: 2014-02-12T23:07:14.856626+00:00
  • date_released: 2011-02-11
  • doi: 10.17989/ENCSR000DQK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Replicate 2,1 of this experiment was previously attributed to biosample ENCBS391ENC and replicate 1,1 of this experiment was previously attributed to biosample ENCBS391ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000DQK float

Histone_ChIP-seq_ENCSR000DQK

Histone_ChIP-seq ENCSR000DQK [biosample_summary="Homo sapiens Caco-2" and target="H3K36me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000DQK [1.86, 10.2]
n
6,715,717
mean
4.06
sd
0.885

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 67157170.21% 31714
chr1 339687 0.14% 1716
chr2 457091 0.19% 2236
chr3 284659 0.14% 1478
chr4 95213 0.05% 503
chr5 319726 0.18% 1570
chr6 225150 0.13% 1157
chr7 330762 0.21% 1625
chr8 128248 0.09% 664
chr9 191959 0.14% 958
chr10 478376 0.36% 2274
chr11 756604 0.56% 3290
chr12 366902 0.28% 1770
chr13 145603 0.13% 748
chr14 120995 0.11% 625
chr15 123832 0.12% 633
chr16 388835 0.43% 1797
chr17 486877 0.58% 2234
chr18 44036 0.05% 232
chr19 528221 0.90% 2304
chr20 678122 1.05% 2753
chr21 38863 0.08% 205
chr22 152987 0.30% 766
chrX 32969 0.02% 176
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31714 113 4912 211.76 180
global segment-length histogram

Files

Filename Size md5
ENCFF479TQU.bed.gz 563.66 KB c84b20c915299cd52b2f15c9625495e9
ENCFF479TQU.tabix.bed.gz 300.76 KB d170909c987cae8598ce78fb4965e88b
ENCFF479TQU.tabix.bed.gz.tbi 116.23 KB 3157d4f466922e8cc5f8385b0a7ef874
genomic_resource.yaml 2.91 KB c905fc6a438856fa25c40e74b26e29bb
statistics/