Resource
| Id | Histone_ChIP-seq/ENCSR000AMC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMC [biosample_summary="Homo sapiens HepG2" and target="H3K4me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN049DAT|/analyses/ENCAN049DAT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF018EID|/files/ENCFF018EID/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11064166 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF837GSJ|/files/ENCFF837GSJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13346272 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMC | float |
Histone_ChIP-seq_ENCSR000AMC |
Histone_ChIP-seq ENCSR000AMC [biosample_summary="Homo sapiens HepG2" and target="H3K4me2"]
|
 |
[1.99, 47] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 97982318 | 3.05% | 92866 |
| chr1 | 9671232 | 3.88% | 8976 |
| chr1_KI270713v1_random | 1451 | 3.56% | 5 |
| chr1_KI270714v1_random | 530 | 1.27% | 2 |
| chr2 | 7893146 | 3.26% | 7307 |
| chr3 | 5805380 | 2.93% | 5557 |
| chr4 | 3737420 | 1.96% | 3683 |
| chr5 | 4605838 | 2.54% | 4364 |
| chr6 | 5895526 | 3.45% | 5313 |
| chr7 | 4610197 | 2.89% | 4610 |
| chr8 | 3741469 | 2.58% | 3671 |
| chr9 | 4114067 | 2.97% | 3802 |
| chr10 | 4401497 | 3.29% | 4335 |
| chr11 | 4683232 | 3.47% | 4284 |
| chr12 | 4705582 | 3.53% | 4449 |
| chr13 | 2088810 | 1.83% | 2080 |
| chr14 | 3453681 | 3.23% | 3172 |
| chr14_GL000194v1_random | 775 | 0.40% | 2 |
| chr15 | 3113935 | 3.05% | 3041 |
| chr16 | 4296566 | 4.76% | 4001 |
| chr17 | 5684450 | 6.83% | 5139 |
| chr17_GL000205v2_random | 2997 | 1.61% | 4 |
| chr18 | 1850133 | 2.30% | 1807 |
| chr19 | 4624886 | 7.89% | 4510 |
| chr20 | 3120275 | 4.84% | 2790 |
| chr21 | 1072720 | 2.30% | 1082 |
| chr22 | 2322913 | 4.57% | 2182 |
| chrUn_GL000195v1 | 2621 | 1.43% | 6 |
| chrUn_GL000219v1 | 6628 | 3.70% | 5 |
| chrUn_GL000220v1 | 299 | 0.18% | 1 |
| chrUn_KI270744v1 | 295 | 0.18% | 1 |
| chrX | 2381569 | 1.53% | 2587 |
| chrY | 92198 | 0.16% | 98 |
| 3334 contigs with no values (127925195 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 92866 | 165 | 14482 | 1055.09 | 744 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF739KJL.bed.gz | 2.32 MB | be6b6360c5eb8666d817b18021850a76 |
| ENCFF739KJL.tabix.bed.gz | 1019.59 KB | 89fa5e32b0eb9235f7076e6237047293 |
| ENCFF739KJL.tabix.bed.gz.tbi | 283.78 KB | e685fd4ef4bec4f3100d3c22778d5097 |
| genomic_resource.yaml | 2.46 KB | 66d35501efa1e1ca823771309e5577d8 |
| statistics/ |