type: position_score
table:
  filename: ENCFF739KJL.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR000AMC
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR000AMC [biosample_summary="Homo sapiens HepG2" and target="H3K4me2"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR000AMC [biosample_summary="Homo sapiens HepG2" and target="H3K4me2"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: replicated peaks\n\n**audit\\_internal\\\
    _action**: Archived analysis {ENCAN049DAT|/analyses/ENCAN049DAT/} has in progress\
    \ subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF018EID|/files/ENCFF018EID/}\
    \ processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11064166 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ H3K4me2-human and investigated as a narrow histone mark is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/})\n\n**audit\\\
    _warning**: Processed alignments file {ENCFF837GSJ|/files/ENCFF837GSJ/} processed\
    \ by ChIP-seq ENCODE3 GRCh38 pipeline has 13346272 usable fragments. The minimum\
    \ ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human\
    \ and investigated as a narrow histone mark is 10 million usable fragments. The\
    \ recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE\
    \ ChIP-seq data standards|/data-standards/chip-seq/})"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000AMC
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HepG2
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR000AMC
    date_created: '2013-11-07T22:16:07.337479+00:00'
    date_released: '2011-02-10'
    submitter_comment: As of February 9th, 2017, the control has been changed to ENCSR055XHN,
      requiring new peaks and signal files.
    target: H3K4me2