Resource

Id ATAC-seq/ENCSR322SBNcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR322SBN [biosample_summary="Homo sapiens HG03457"]
Description
Labels
  • accession: ENCSR322SBN
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010882/
  • biosample_summary: Homo sapiens HG03457
  • date_created: 2020-11-24T22:02:42.768563+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR322SBN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR322SBN float

ATAC-seq_ENCSR322SBN

ATAC-seq ENCSR322SBN [biosample_summary="Homo sapiens HG03457"]
HISTOGRAM FOR ATAC-seq_ENCSR322SBN [1.57, 37.8]
n
41,870,043
mean
6.64
sd
3.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 418700431.30% 81251
chr1 3727889 1.50% 7093
chr2 3585671 1.48% 7196
chr3 2936450 1.48% 5857
chr4 2479317 1.30% 5060
chr5 2563075 1.41% 5169
chr6 2851866 1.67% 5603
chr7 2260375 1.42% 4449
chr8 2079655 1.43% 4194
chr9 1679311 1.21% 3287
chr10 1998585 1.49% 3936
chr11 1998448 1.48% 3898
chr12 2064593 1.55% 3936
chr13 1145948 1.00% 2306
chr14 1294045 1.21% 2417
chr15 1198483 1.18% 2279
chr16 1210537 1.34% 2167
chr17 1435758 1.72% 2508
chr18 971833 1.21% 2000
chr19 1209451 2.06% 1929
chr20 877604 1.36% 1685
chr21 428808 0.92% 800
chr22 537723 1.06% 913
chrX 1240534 0.80% 2372
chrY 94084 0.16% 197
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81251 150 2821 515.32 432
global segment-length histogram

Files

Filename Size md5
ENCFF717APJ.bed.gz 2.95 MB 64d688d9aff949b956d4e8662ae74caa
ENCFF717APJ.tabix.bed.gz 911.26 KB 2ba467d02daa7b66619cefcb3068ef1d
ENCFF717APJ.tabix.bed.gz.tbi 392.65 KB 6e89ebdc45c3cb8f8695b6287e952983
genomic_resource.yaml 1.85 KB a66ecf94320b195293ea342f7e1335c4
statistics/