Resource
| Id | ATAC-seq/ENCSR322SBN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR322SBN [biosample_summary="Homo sapiens HG03457"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN579HUD|/analyses/ENCAN579HUD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF717APJ|/files/ENCFF717APJ/} (overlap peaks) and {ENCFF619LDY|/files/ENCFF619LDY/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 122275 and 65850 peaks. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR322SBN | float |
ATAC-seq_ENCSR322SBN |
ATAC-seq ENCSR322SBN [biosample_summary="Homo sapiens HG03457"]
|
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[1.57, 37.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41870043 | 1.30% | 81251 |
| chr1 | 3727889 | 1.50% | 7093 |
| chr2 | 3585671 | 1.48% | 7196 |
| chr3 | 2936450 | 1.48% | 5857 |
| chr4 | 2479317 | 1.30% | 5060 |
| chr5 | 2563075 | 1.41% | 5169 |
| chr6 | 2851866 | 1.67% | 5603 |
| chr7 | 2260375 | 1.42% | 4449 |
| chr8 | 2079655 | 1.43% | 4194 |
| chr9 | 1679311 | 1.21% | 3287 |
| chr10 | 1998585 | 1.49% | 3936 |
| chr11 | 1998448 | 1.48% | 3898 |
| chr12 | 2064593 | 1.55% | 3936 |
| chr13 | 1145948 | 1.00% | 2306 |
| chr14 | 1294045 | 1.21% | 2417 |
| chr15 | 1198483 | 1.18% | 2279 |
| chr16 | 1210537 | 1.34% | 2167 |
| chr17 | 1435758 | 1.72% | 2508 |
| chr18 | 971833 | 1.21% | 2000 |
| chr19 | 1209451 | 2.06% | 1929 |
| chr20 | 877604 | 1.36% | 1685 |
| chr21 | 428808 | 0.92% | 800 |
| chr22 | 537723 | 1.06% | 913 |
| chrX | 1240534 | 0.80% | 2372 |
| chrY | 94084 | 0.16% | 197 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 81251 | 150 | 2821 | 515.32 | 432 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF717APJ.bed.gz | 2.95 MB | 64d688d9aff949b956d4e8662ae74caa |
| ENCFF717APJ.tabix.bed.gz | 911.26 KB | 2ba467d02daa7b66619cefcb3068ef1d |
| ENCFF717APJ.tabix.bed.gz.tbi | 392.65 KB | 6e89ebdc45c3cb8f8695b6287e952983 |
| genomic_resource.yaml | 1.85 KB | a66ecf94320b195293ea342f7e1335c4 |
| statistics/ |
