type: position_score
table:
  filename: ENCFF717APJ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: ATAC-seq_ENCSR322SBN
  column_index: 3
  type: float
  desc: 'ATAC-seq ENCSR322SBN [biosample_summary="Homo sapiens HG03457"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ATAC-seq ENCSR322SBN [biosample_summary="Homo sapiens HG03457"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\_internal\\_action**:\
    \ Released analysis {ENCAN579HUD|/analyses/ENCAN579HUD/} has in progress subobject\
    \ quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/}\n\n\
    **audit\\_warning**: According to ENCODE4 standards, ATAC-seq assays processed\
    \ by the uniform processing pipeline should have either >150k reproducible peaks\
    \ in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k\
    \ or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is\
    \ not compliant. File(s) {ENCFF717APJ|/files/ENCFF717APJ/} (overlap peaks) and\
    \ {ENCFF619LDY|/files/ENCFF619LDY/} (IDR thresholded peaks) processed by ATAC-seq\
    \ ENCODE4 v1.9.1 GRCh38 pipeline have 122275 and 65850 peaks."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR322SBN
    status: released
    assay_term_name: ATAC-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HG03457
    replication_type: unreplicated
    biosample_ontology: /biosample-types/cell_line_EFO_0010882/
    perturbed: false
    doi: 10.17989/ENCSR322SBN
    date_created: '2020-11-24T22:02:42.768563+00:00'
    date_released: '2021-02-11'
    submitter_comment: ''