Resource

Id ATAC-seq/ENCSR080SNFcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR080SNF [biosample_summary="Homo sapiens RWPE2"]
Description
Labels
  • accession: ENCSR080SNF
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007610/
  • biosample_summary: Homo sapiens RWPE2
  • date_created: 2020-08-11T21:29:00.424826+00:00
  • date_released: 2021-04-06
  • doi: 10.17989/ENCSR080SNF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR080SNF float

ATAC-seq_ENCSR080SNF
ATAC-seq ENCSR080SNF [biosample_summary="Homo sapiens RWPE2"]
 HISTOGRAM FOR ATAC-seq_ENCSR080SNF [1.37, 43.4]
n
87,090,892
mean
7.99
sd
4.81

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 870908922.71% 166937
chr1 7586127 3.05% 14327
chr2 6700877 2.77% 13081
chr3 5306160 2.68% 10504
chr4 4297223 2.26% 8677
chr5 5974562 3.29% 11691
chr6 4922115 2.88% 9497
chr7 4322258 2.71% 8304
chr8 3776860 2.60% 7407
chr9 3582893 2.59% 6800
chr10 3902830 2.92% 7535
chr11 4205727 3.11% 7967
chr12 3848336 2.89% 7346
chr13 1892040 1.65% 3873
chr14 3353897 3.13% 6436
chr15 4039036 3.96% 7580
chr16 2834781 3.14% 5208
chr17 3654560 4.39% 6525
chr18 1811806 2.25% 3658
chr19 2587353 4.41% 4434
chr20 3556030 5.52% 6684
chr21 1031693 2.21% 1959
chr22 1498016 2.95% 2726
chrX 2053681 1.32% 3982
chrY 352031 0.62% 736
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 166937 150 3644 521.7 434
global segment-length histogram

Files

Filename Size md5
ENCFF729MMJ.bed.gz 5.96 MB 8bf74b779aa4907d1fed76eba8350cef
ENCFF729MMJ.tabix.bed.gz 1.8 MB dc163d90df703323e140ea61ff785d97
ENCFF729MMJ.tabix.bed.gz.tbi 595.21 KB b7c543831bab3dbd0df3e64d06c4f8b7
genomic_resource.yaml 2.04 KB 441695a5bd81a0c663fb4c7e2ec7b116
statistics/