type: position_score
table:
  filename: ENCFF729MMJ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: ATAC-seq_ENCSR080SNF
  column_index: 3
  type: float
  desc: 'ATAC-seq ENCSR080SNF [biosample_summary="Homo sapiens RWPE2"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ATAC-seq ENCSR080SNF [biosample_summary="Homo sapiens RWPE2"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2,\
    \ Rep 3\n\n**summary**: \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN367YCE|/analyses/ENCAN367YCE/} has\
    \ in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/}\n\
    \n**audit\\_warning**: Alignment file {ENCFF417FFE|/files/ENCFF417FFE/} processed\
    \ by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 24028837 usable fragments. According\
    \ to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline\
    \ should have > 25 million usable fragments. 20-25 million is acceptable and <\
    \ 15 million is not compliant.\n\n**audit\\_warning**: Alignment file {ENCFF452BSA|/files/ENCFF452BSA/}\
    \ processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 21471668 usable fragments.\
    \ According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing\
    \ pipeline should have > 25 million usable fragments. 20-25 million is acceptable\
    \ and < 15 million is not compliant."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR080SNF
    status: released
    assay_term_name: ATAC-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens RWPE2
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0007610/
    perturbed: false
    doi: 10.17989/ENCSR080SNF
    date_created: '2020-08-11T21:29:00.424826+00:00'
    date_released: '2021-04-06'
    submitter_comment: ''