type: position_score
table:
  filename: ENCFF617JQS.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR736BUG
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR736BUG [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="EGR1"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR736BUG [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="EGR1"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: male adult (32 years) with nonobstructive coronary artery disease


    **output\_type**: optimal IDR thresholded peaks


    **audit\_internal\_action**: File {ENCFF617JQS|/files/ENCFF617JQS/} with status
    ''released'' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status
    ''archived''.


    **audit\_internal\_action**: Archived analysis {ENCAN782ICQ|/analyses/ENCAN782ICQ/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_warning**: Processed alignments file {ENCFF174ZGG|/files/ENCFF174ZGG/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18205232 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    EGR1-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_warning**: Processed alignments file {ENCFF995SEN|/files/ENCFF995SEN/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17605252 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    EGR1-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR736BUG
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: male adult (32 years) with nonobstructive coronary artery
      disease
    biosample_summary: Homo sapiens with nonobstructive coronary artery disease; liver
      tissue male adult (32 years)
    replication_type: isogenic
    biosample_ontology: /biosample-types/tissue_UBERON_0002107/
    perturbed: false
    doi: 10.17989/ENCSR736BUG
    date_created: '2015-09-29T16:19:56.928686+00:00'
    date_released: '2016-06-30'
    submitter_comment: 'This experiment is being used in the ENCODE-DREAM Transcription
      Factor Binding Site Prediction Challenge (https://www.synapse.org/#!Synapse:syn6131484/wiki/400026).
      The files will be unavailable until after the challenge completes on 09-30-16.
      UPDATE: There will be a second round to the challenge that is expected to end
      on 01-11-2017'
    target: EGR1