type: position_score
table:
  filename: ENCFF075OIT.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR669NFS
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR669NFS [TISSUE: Homo sapiens K562, TARGET: ARNT]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 3, Rep 4\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN601LJH|/analyses/ENCAN601LJH/} has in progress\
    \ subobject document {18b93594-86c1-4449-a073-dfb54406ec82|/documents/18b93594-86c1-4449-a073-dfb54406ec82/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN601LJH|/analyses/ENCAN601LJH/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF272TFI|/files/ENCFF272TFI/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17996124 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ ARNT-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF966JXF|/files/ENCFF966JXF/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline has 19267129 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting ARNT-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**: PBC1 (PCR\
    \ Bottlenecking Coefficient 1, M1/M\\_distinct) is the ratio of the number of\
    \ genomic locations where exactly one read maps uniquely (M1) to the number of\
    \ genomic locations where some reads map (M\\_distinct). A PBC1 value in the range\
    \ 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 -\
    \ 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is\
    \ recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF272TFI|/files/ENCFF272TFI/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library\
    \ with PBC1 value of 0.84.\n\n**audit\\_warning**: PBC2 (PCR Bottlenecking Coefficient\
    \ 2, M1/M2) is the ratio of the number of genomic locations where exactly one\
    \ read maps uniquely (M1) to the number of genomic locations where two reads map\
    \ uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 -\
    \ 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking.\
    \ PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments\
    \ file {ENCFF272TFI|/files/ENCFF272TFI/} processed by ChIP-seq ENCODE4 v1.6.1\
    \ GRCh38 pipeline was generated from a library with PBC2 value of 6.19."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR669NFS
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens K562
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002067/
    perturbed: false
    doi: 10.17989/ENCSR669NFS
    date_created: '2017-02-08T19:32:01.228685+00:00'
    date_released: '2018-01-26'
    submitter_comment: We note that this ChIP-seq experiment was performed using an
      antibody for which we have provided a compliant primary characterization but
      no secondary characterization.  A secondary characterization using IP-MS was
      attempted, but the experiment failed.  There is no remaining antibody from this
      lot number and therefore additional secondary characterizations cannot be attempted.
      However, because the replicate ChIP-seq datasets passed the ENCODE IDR ChIP-seq
      data quality standards, we are releasing the data to the public.
    target: ARNT