type: position_score
table:
  filename: ENCFF079MKQ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR666QNP
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR666QNP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD3" and target="TEAD3"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR666QNP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD3" and target="TEAD3"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using CRISPR targeting H. sapiens
    TEAD3


    **output\_type**: optimal IDR thresholded peaks


    **audit\_internal\_action**: Archived analysis {ENCAN628OCL|/analyses/ENCAN628OCL/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF802TPU|/files/ENCFF802TPU/}, {ENCFF257QVH|/files/ENCFF257QVH/}
    processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.42 and a
    self consistency ratio of 2.54. According to ENCODE standards, having both rescue
    ratio and self consistency ratio values < 2 is recommended, but having only one
    of the ratio values < 2 is acceptable.


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF138XKG|/files/ENCFF138XKG/}, {ENCFF079MKQ|/files/ENCFF079MKQ/}
    processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.42 and a
    self consistency ratio of 2.54. According to ENCODE standards, having both rescue
    ratio and self consistency ratio values < 2 is recommended, but having only one
    of the ratio values < 2 is acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR666QNP
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using CRISPR targeting
      H. sapiens TEAD3
    biosample_summary: Homo sapiens HepG2 genetically modified (insertion) using CRISPR
      targeting H. sapiens TEAD3
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR666QNP
    date_created: '2016-07-28T18:55:21.615543+00:00'
    date_released: '2016-11-08'
    submitter_comment: ENCODE4 pipeline run failed at the chip.call_peak_pooled step.
    target: TEAD3