type: position_score
table:
  filename: ENCFF168YVH.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR592ZQB
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR592ZQB [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2" and target="IRF2"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR592ZQB [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2" and target="IRF2"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using CRISPR targeting H. sapiens
    IRF2


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN655GUY|/analyses/ENCAN655GUY/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_warning**: Processed alignments file {ENCFF262ZGL|/files/ENCFF262ZGL/}
    processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 16661175 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    IRF2-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF168YVH|/files/ENCFF168YVH/} processed by ChIP-seq
    ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.35 and a self consistency
    ratio of 2.95. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR592ZQB
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using CRISPR targeting
      H. sapiens IRF2
    biosample_summary: Homo sapiens WTC11 genetically modified (insertion) using CRISPR
      targeting H. sapiens IRF2
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0009747/
    perturbed: false
    doi: 10.17989/ENCSR592ZQB
    date_created: '2022-05-23T17:47:46.254044+00:00'
    date_released: '2022-08-31'
    submitter_comment: ''
    target: IRF2