type: position_score
table:
  filename: ENCFF921ABU.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR289NSN
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR289NSN [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF354C" and target="ZNF354C"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR289NSN [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF354C" and target="ZNF354C"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using site-specific recombination
    targeting H. sapiens ZNF354C


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN004GRC|/analyses/ENCAN004GRC/}
    has in progress subobject document {2fc04877-a1f0-403a-ae1a-936258da5b9c|/documents/2fc04877-a1f0-403a-ae1a-936258da5b9c/}


    **audit\_internal\_action**: Released analysis {ENCAN004GRC|/analyses/ENCAN004GRC/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_warning**: Processed alignments file {ENCFF784GMT|/files/ENCFF784GMT/}
    processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 16795861 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    ZNF354C-human and investigated as a transcription factor is 10 million usable
    fragments. The recommended value is > 20 million, but > 10 million is acceptable.
    (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF921ABU|/files/ENCFF921ABU/} processed by ChIP-seq
    ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.22 and a self consistency
    ratio of 2.98. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF566BZR|/files/ENCFF566BZR/} processed by ChIP-seq
    ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.22 and a self consistency
    ratio of 2.98. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR289NSN
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using site-specific
      recombination targeting H. sapiens ZNF354C
    biosample_summary: Homo sapiens HEK293 genetically modified (insertion) using
      site-specific recombination targeting H. sapiens ZNF354C
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001182/
    perturbed: false
    doi: 10.17989/ENCSR289NSN
    date_created: '2016-03-29T17:49:49.962098+00:00'
    date_released: '2016-10-07'
    submitter_comment: ''
    target: ZNF354C