type: position_score
table:
  filename: ENCFF052LSZ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR097EEA
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR097EEA [TISSUE: Homo sapiens gastroesophageal sphincter
    tissue female adult (53 years), TARGET: POLR2A]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: female adult (53 years)


    **output\_type**: pseudoreplicated IDR thresholded peaks


    **audit\_internal\_action**: Archived analysis {ENCAN504ZWK|/analyses/ENCAN504ZWK/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_internal\_action**: File {ENCFF052LSZ|/files/ENCFF052LSZ/} with status
    ''released'' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status
    ''archived''.


    **audit\_not\_compliant**: NRF (Non Redundant Fraction) is equal to the result
    of the division of the number of reads after duplicates removal by the total number
    of reads. An NRF value in the range 0 - 0.5 is poor complexity, 0.5 - 0.8 is moderate
    complexity, and > 0.8 high complexity. NRF value > 0.8 is recommended, but > 0.5
    is acceptable. ENCODE processed alignments file {ENCFF036WJL|/files/ENCFF036WJL/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with
    NRF value of 0.42.


    **audit\_not\_compliant**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct)
    is the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments
    file {ENCFF036WJL|/files/ENCFF036WJL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline
    was generated from a library with PBC1 value of 0.42.


    **audit\_warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio
    of the number of genomic locations where exactly one read maps uniquely (M1) to
    the number of genomic locations where two reads map uniquely (M2). A PBC2 value
    in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3
    - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,
    but > 3 is acceptable. ENCODE processed alignments file {ENCFF036WJL|/files/ENCFF036WJL/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with
    PBC2 value of 1.65.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR097EEA
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female adult (53 years)
    biosample_summary: Homo sapiens gastroesophageal sphincter tissue female adult
      (53 years)
    replication_type: unreplicated
    biosample_ontology: /biosample-types/tissue_UBERON_0004550/
    perturbed: false
    doi: 10.17989/ENCSR097EEA
    date_created: '2016-04-24T07:24:51.627893+00:00'
    date_released: '2016-07-06'
    submitter_comment: ''
    target: POLR2A