type: position_score
table:
  filename: ENCFF668VNS.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EUP
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000EUP [biosample_summary="Homo sapiens H1" and target="MAX"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000EUP [biosample_summary="Homo sapiens H1" and target="MAX"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _error**: Processed alignments file {ENCFF764OCO|/files/ENCFF764OCO/} processed\
    \ by ChIP-seq ENCODE3 hg19 pipeline has 4271427 usable fragments. The minimum\
    \ ENCODE standard for each replicate in a ChIP-seq experiment targeting MAX-human\
    \ and investigated as a transcription factor is 10 million usable fragments. The\
    \ recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE\
    \ ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_error**: Processed\
    \ alignments file {ENCFF481XFG|/files/ENCFF481XFG/} processed by ChIP-seq ENCODE3\
    \ hg19 pipeline has 3699012 usable fragments. The minimum ENCODE standard for\
    \ each replicate in a ChIP-seq experiment targeting MAX-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )\n\n**audit\\_internal\\_action**: Archived\
    \ analysis {ENCAN437MBR|/analyses/ENCAN437MBR/} has in progress subobject quality\
    \ standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\n**audit\\\
    _warning**: Replicate concordance in ChIP-seq experiments is measured by calculating\
    \ IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded\
    \ peaks files {ENCFF548MEP|/files/ENCFF548MEP/}, {ENCFF668VNS|/files/ENCFF668VNS/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.16 and\
    \ a self consistency ratio of 2.86. According to ENCODE standards, having both\
    \ rescue ratio and self consistency ratio values < 2 is recommended, but having\
    \ only one of the ratio values < 2 is acceptable.\n\n**audit\\_warning**: Replicate\
    \ concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible\
    \ Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF657ICR|/files/ENCFF657ICR/},\
    \ {ENCFF268FDZ|/files/ENCFF268FDZ/} processed by ChIP-seq ENCODE3 hg19 pipeline\
    \ have a rescue ratio of 1.16 and a self consistency ratio of 2.86. According\
    \ to ENCODE standards, having both rescue ratio and self consistency ratio values\
    \ < 2 is recommended, but having only one of the ratio values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EUP
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens H1
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0003042/
    perturbed: false
    doi: 10.17989/ENCSR000EUP
    date_created: '2013-12-12T07:12:54.960182+00:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: MAX