type: position_score
table:
  filename: ENCFF441IFB.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EFC
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000EFC [biosample_summary="Homo sapiens IMR-90" and target="CHD1"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000EFC [biosample_summary="Homo sapiens IMR-90" and target="CHD1"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN287VWU|/analyses/ENCAN287VWU/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF767XMC|/files/ENCFF767XMC/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline has 15244451 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ CHD1-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF437KCG|/files/ENCFF437KCG/} processed by ChIP-seq\
    \ ENCODE3 hg19 pipeline has 19999664 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting CHD1-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EFC
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens IMR-90
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001196/
    perturbed: false
    doi: 10.17989/ENCSR000EFC
    date_created: '2014-02-12T23:10:31.143429+00:00'
    date_released: '2012-08-20'
    submitter_comment: ''
    target: CHD1