type: position_score
table:
  filename: ENCFF870KJE.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EFB
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000EFB [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="POLR2A"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000EFB [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="POLR2A"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2, Rep 3


    **summary**: newborn


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN496LMP|/analyses/ENCAN496LMP/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN496LMP|/analyses/ENCAN496LMP/}
    has in progress subobject document {59330728-be29-4816-9b9f-0ef62d49ecf9|/documents/59330728-be29-4816-9b9f-0ef62d49ecf9/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF960EIT|/files/ENCFF960EIT/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 7809067 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    POLR2A-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_not\_compliant**: Processed alignments file {ENCFF362NDM|/files/ENCFF362NDM/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 8293447 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    POLR2A-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_not\_compliant**: Processed alignments file {ENCFF561KEL|/files/ENCFF561KEL/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 7271235 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    POLR2A-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EFB
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: newborn
    biosample_summary: Homo sapiens endothelial cell of umbilical vein newborn
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0002618/
    perturbed: false
    doi: 10.17989/ENCSR000EFB
    date_created: '2014-02-12T23:10:35.778975+00:00'
    date_released: '2011-10-29'
    submitter_comment: As of August 2022, the donors associated with the biosamples
      in this dataset were changed from ENCDO000AAS to ENCDO466MPW and ENCDO560UMK.
      See PMID:32728101.
    target: POLR2A