type: position_score
table:
  filename: ENCFF767DMU.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DNU
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000DNU [biosample_summary="Homo sapiens HeLa-S3" and target="POLR3A"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000DNU [biosample_summary="Homo sapiens HeLa-S3" and target="POLR3A"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN230FDV|/analyses/ENCAN230FDV/} has in progress\
    \ subobject document {9c9bb134-3a78-4add-a3fe-334644e85aa4|/documents/9c9bb134-3a78-4add-a3fe-334644e85aa4/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN230FDV|/analyses/ENCAN230FDV/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF699AEX|/files/ENCFF699AEX/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13110046 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR3A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _warning**: Processed alignments file {ENCFF954BIW|/files/ENCFF954BIW/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13576513 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR3A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\\_distinct) is the ratio\
    \ of the number of genomic locations where exactly one read maps uniquely (M1)\
    \ to the number of genomic locations where some reads map (M\\_distinct). A PBC1\
    \ value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking,\
    \ 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value >\
    \ 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file\
    \ {ENCFF699AEX|/files/ENCFF699AEX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38\
    \ pipeline was generated from a library with PBC1 value of 0.90."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DNU
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HeLa-S3
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002791/
    perturbed: false
    doi: 10.17989/ENCSR000DNU
    date_created: '2013-12-12T06:55:12.865516+00:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: POLR3A