type: position_score
table:
  filename: ENCFF412KEU.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DLK
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000DLK [TISSUE: Homo sapiens H1, TARGET: CTCF]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\_action**:\
    \ Released analysis {ENCAN075FQD|/analyses/ENCAN075FQD/} has in progress subobject\
    \ quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN075FQD|/analyses/ENCAN075FQD/} has\
    \ in progress subobject document {b57aa01f-0ec1-4e6e-9380-3e369b076664|/documents/b57aa01f-0ec1-4e6e-9380-3e369b076664/}\n\
    \n**audit\\_not\\_compliant**: Processed alignments file {ENCFF237PQJ|/files/ENCFF237PQJ/}\
    \ processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 9785475 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ CTCF-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ PBC1 (PCR Bottlenecking Coefficient 1, M1/M\\_distinct) is the ratio of the\
    \ number of genomic locations where exactly one read maps uniquely (M1) to the\
    \ number of genomic locations where some reads map (M\\_distinct). A PBC1 value\
    \ in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking,\
    \ 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value >\
    \ 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file\
    \ {ENCFF237PQJ|/files/ENCFF237PQJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38\
    \ pipeline was generated from a library with PBC1 value of 0.90."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DLK
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens H1
    replication_type: unreplicated
    biosample_ontology: /biosample-types/cell_line_EFO_0003042/
    perturbed: false
    doi: 10.17989/ENCSR000DLK
    date_created: '2013-12-12T06:54:19.692874+00:00'
    date_released: '2011-03-17'
    submitter_comment: ''
    target: CTCF