Resource
| Id | TF_ChIP-seq/ENCSR000BUF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary |
TF_ChIP-seq ENCSR000BUF [biosample_summary="Homo sapiens GM12878" and target="CREB1"]
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| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN769PEM|/analyses/ENCAN769PEM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN769PEM|/analyses/ENCAN769PEM/} has in progress subobject document {944ec077-0afe-4568-9806-39bdc99fe3c7|/documents/944ec077-0afe-4568-9806-39bdc99fe3c7/} audit_warning: Processed alignments file {ENCFF538DUT|/files/ENCFF538DUT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12663994 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CREB1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF108DXA|/files/ENCFF108DXA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF108DXA|/files/ENCFF108DXA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.27. |
| Labels |
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Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BUF | float |
TF_ChIP-seq_ENCSR000BUF |
TF_ChIP-seq ENCSR000BUF [biosample_summary="Homo sapiens GM12878" and target="CREB1"]
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 |
[4.44, 641] |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF053UZX.bed.gz | 453.05 KB | 5e5c8ea6b01a985f3099781d262682cc |
| ENCFF053UZX.bed.gz.dvc | 100.0 B | a6ecb53be6f376bed43ec094deb57c42 |
| ENCFF053UZX.tabix.bed.gz | 348.98 KB | 9ecacf7503860b5817b34276c8106fa0 |
| ENCFF053UZX.tabix.bed.gz.dvc | 106.0 B | 5de13de9dca5b97b6aab9da9b9ad7112 |
| ENCFF053UZX.tabix.bed.gz.tbi | 163.07 KB | 066c9ebee40925e1daf60ae69d3b7f9b |
| ENCFF053UZX.tabix.bed.gz.tbi.dvc | 110.0 B | e7342408c308f984d23a963cb492acf8 |
| genomic_resource.yaml | 3.38 KB | 57a33baa9b732e12e2d222e7683a5625 |
| statistics/ |