Resource

Id TF_ChIP-seq/ENCSR000BTIcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BTI [biosample_summary="Homo sapiens A549" and target="GATA3"]
Description
Labels
  • accession: ENCSR000BTI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001086/
  • biosample_summary: Homo sapiens A549
  • date_created: 2013-12-12T06:34:38.786623+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BTI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: GATA3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BTI float

TF_ChIP-seq_ENCSR000BTI
TF_ChIP-seq ENCSR000BTI [biosample_summary="Homo sapiens A549" and target="GATA3"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BTI [6.11, 587]
n
8,182,250
mean
60.5
sd
62.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 81822500.25% 25030
chr1 672615 0.27% 2059
chr2 722558 0.30% 2196
chr3 470168 0.24% 1432
chr4 312519 0.16% 941
chr5 499914 0.28% 1541
chr6 394032 0.23% 1178
chr7 451326 0.28% 1363
chr8 432587 0.30% 1307
chr9 387208 0.28% 1173
chr10 420593 0.31% 1299
chr11 386142 0.29% 1184
chr12 504040 0.38% 1533
chr13 137316 0.12% 399
chr14 249581 0.23% 779
chr15 295626 0.29% 896
chr16 242021 0.27% 755
chr17 511571 0.61% 1565
chr18 132446 0.16% 404
chr19 357587 0.61% 1173
chr20 266794 0.41% 830
chr21 55266 0.12% 166
chr22 104880 0.21% 313
chrX 174480 0.11% 541
chrY 980 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25030 1 2155 326.9 420
global segment-length histogram

Files

Filename Size md5
ENCFF517TKD.bed.gz 412.76 KB cadeb10905b7b949dda0efc955e1c63d
ENCFF517TKD.tabix.bed.gz 291.0 KB b186c5148d59ca08352525dc55815097
ENCFF517TKD.tabix.bed.gz.tbi 133.25 KB 56d6058a6e1ce9f3fe8f28809cf3dbe4
genomic_resource.yaml 2.1 KB 7c50c9609076cd770807c6c4e876e98e
statistics/