Resource

Id TF_ChIP-seq/ENCSR000BTDcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BTD [biosample_summary="Homo sapiens Ishikawa" and target="SRF"]
Description
Labels
  • accession: ENCSR000BTD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005718/
  • biosample_summary: Homo sapiens Ishikawa
  • date_created: 2013-11-06T05:08:02.827101+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BTD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: SRF

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BTD float

TF_ChIP-seq_ENCSR000BTD

TF_ChIP-seq ENCSR000BTD [biosample_summary="Homo sapiens Ishikawa" and target="SRF"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BTD [5.76, 675]
n
3,719,302
mean
49.3
sd
62.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 37193020.12% 13808
chr1 354430 0.14% 1333
chr2 258496 0.11% 968
chr3 234385 0.12% 866
chr4 178414 0.09% 661
chr5 177227 0.10% 646
chr6 194030 0.11% 721
chr7 175146 0.11% 643
chr8 142047 0.10% 522
chr9 158726 0.11% 593
chr10 198678 0.15% 730
chr11 179743 0.13% 660
chr12 259926 0.20% 971
chr13 79944 0.07% 301
chr14 124534 0.12% 469
chr15 111150 0.11% 410
chr16 147833 0.16% 553
chr17 207524 0.25% 754
chr18 72288 0.09% 280
chr19 216086 0.37% 799
chr20 95597 0.15% 362
chr21 29497 0.06% 111
chr22 82911 0.16% 300
chrX 40690 0.03% 155
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13808 2 672 269.36 304
global segment-length histogram

Files

Filename Size md5
ENCFF714RQM.bed.gz 223.25 KB f72872826bfe9038cf061ab2509d3700
ENCFF714RQM.tabix.bed.gz 161.5 KB b726b3e2b185b00c19fa08d696ff102a
ENCFF714RQM.tabix.bed.gz.tbi 101.17 KB 3b22f7be106f753388041a36a1df51be
genomic_resource.yaml 2.6 KB 38655408018bf1ddc8c8937c8f8379ec
statistics/