Resource

Id TF_ChIP-seq/ENCSR000BSXcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BSX [biosample_summary="Homo sapiens Ishikawa" and target="USF1"]
Description
Labels
  • accession: ENCSR000BSX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005718/
  • biosample_summary: Homo sapiens Ishikawa
  • date_created: 2013-11-06T05:08:02.191750+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BSX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: USF1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BSX float

TF_ChIP-seq_ENCSR000BSX
TF_ChIP-seq ENCSR000BSX [biosample_summary="Homo sapiens Ishikawa" and target="USF1"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BSX [5.97, 594]
n
5,005,646
mean
74.1
sd
92.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 50056460.16% 20987
chr1 457915 0.18% 1922
chr2 341617 0.14% 1439
chr3 303451 0.15% 1272
chr4 213407 0.11% 883
chr5 228508 0.13% 963
chr6 239272 0.14% 1007
chr7 231168 0.15% 969
chr8 196306 0.14% 814
chr9 215087 0.16% 900
chr10 279328 0.21% 1168
chr11 239041 0.18% 996
chr12 308074 0.23% 1289
chr13 94688 0.08% 400
chr14 163001 0.15% 673
chr15 150164 0.15% 634
chr16 234441 0.26% 985
chr17 287049 0.34% 1203
chr18 91257 0.11% 387
chr19 301668 0.51% 1267
chr20 168496 0.26% 716
chr21 52829 0.11% 221
chr22 141117 0.28% 590
chrX 67762 0.04% 289
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20987 3 1190 238.51 260
global segment-length histogram

Files

Filename Size md5
ENCFF916FTX.bed.gz 354.27 KB e0b3fc3bf8db6536469938dbc2b29c6f
ENCFF916FTX.tabix.bed.gz 245.99 KB 44a829695a983b7cad998a52444fe4f0
ENCFF916FTX.tabix.bed.gz.tbi 145.99 KB 361431d194cf4839ad2aef1f98ce97ca
genomic_resource.yaml 1.56 KB 594569f0edb4a5872ea33eac58555354
statistics/