Resource

Id TF_ChIP-seq/ENCSR000BSWcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BSW [biosample_summary="Homo sapiens Ishikawa" and target="TEAD4"]
Description
Labels
  • accession: ENCSR000BSW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005718/
  • biosample_summary: Homo sapiens Ishikawa
  • date_created: 2013-11-06T05:08:00.786629+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BSW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: TEAD4

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BSW float

TF_ChIP-seq_ENCSR000BSW
TF_ChIP-seq ENCSR000BSW [biosample_summary="Homo sapiens Ishikawa" and target="TEAD4"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BSW [6.51, 530]
n
8,630,153
mean
58.4
sd
55

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 86301530.27% 32671
chr1 819032 0.33% 3112
chr2 679055 0.28% 2583
chr3 590268 0.30% 2259
chr4 480203 0.25% 1812
chr5 472816 0.26% 1769
chr6 502103 0.29% 1935
chr7 426848 0.27% 1617
chr8 352254 0.24% 1331
chr9 358059 0.26% 1341
chr10 459130 0.34% 1759
chr11 414836 0.31% 1561
chr12 551519 0.41% 2060
chr13 214776 0.19% 809
chr14 279013 0.26% 1061
chr15 245159 0.24% 939
chr16 268638 0.30% 1006
chr17 428562 0.51% 1615
chr18 187995 0.23% 722
chr19 312820 0.53% 1171
chr20 195848 0.30% 743
chr21 97497 0.21% 366
chr22 181941 0.36% 685
chrX 111781 0.07% 415
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32671 1 739 264.15 300
global segment-length histogram

Files

Filename Size md5
ENCFF438PCR.bed.gz 523.27 KB 0b3a7942f58505a538dfbd45656c2d84
ENCFF438PCR.tabix.bed.gz 379.64 KB 27cf8261479471b697acb4d6b1a20fb3
ENCFF438PCR.tabix.bed.gz.tbi 189.81 KB 6b909fc88bcceadabe998591b27d9a18
genomic_resource.yaml 1.56 KB c72699581b2f9ae1b401ff2a432bdf54
statistics/