Resource
| Id | TF_ChIP-seq/ENCSR000BSQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BSQ [biosample_summary="Homo sapiens Ishikawa" and target="EGR1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN050VWN|/analyses/ENCAN050VWN/} has in progress subobject document {0aa7e7ce-a06f-4b67-a21c-7575b2b7c9cf|/documents/0aa7e7ce-a06f-4b67-a21c-7575b2b7c9cf/} audit_internal_action: Released analysis {ENCAN050VWN|/analyses/ENCAN050VWN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BSQ | float |
TF_ChIP-seq_ENCSR000BSQ |
TF_ChIP-seq ENCSR000BSQ [biosample_summary="Homo sapiens Ishikawa" and target="EGR1"]
|
![]() |
[5.76, 533] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 3186217 | 0.10% | 12476 |
| chr1 | 323433 | 0.13% | 1271 |
| chr2 | 225560 | 0.09% | 883 |
| chr3 | 177109 | 0.09% | 698 |
| chr4 | 104895 | 0.06% | 405 |
| chr5 | 137471 | 0.08% | 536 |
| chr6 | 156657 | 0.09% | 613 |
| chr7 | 150758 | 0.09% | 591 |
| chr8 | 109874 | 0.08% | 431 |
| chr9 | 139558 | 0.10% | 557 |
| chr10 | 157966 | 0.12% | 625 |
| chr11 | 159297 | 0.12% | 616 |
| chr12 | 193065 | 0.14% | 766 |
| chr13 | 64526 | 0.06% | 254 |
| chr14 | 97029 | 0.09% | 376 |
| chr15 | 86359 | 0.08% | 335 |
| chr16 | 150291 | 0.17% | 592 |
| chr17 | 207713 | 0.25% | 812 |
| chr18 | 54300 | 0.07% | 207 |
| chr19 | 231525 | 0.39% | 910 |
| chr20 | 89212 | 0.14% | 340 |
| chr21 | 33993 | 0.07% | 134 |
| chr22 | 88754 | 0.17% | 344 |
| chrX | 46872 | 0.03% | 180 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 12476 | 1 | 491 | 255.39 | 284 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF943XDP.bed.gz | 204.15 KB | 796364a60715ac5c2834b2f0a9c87955 |
| ENCFF943XDP.tabix.bed.gz | 145.88 KB | ef23065429f41ab512863390b9738630 |
| ENCFF943XDP.tabix.bed.gz.tbi | 89.03 KB | 59dc7970255749b727d7d3656d9d3cd1 |
| genomic_resource.yaml | 1.56 KB | a3d41de09c28424eabf4ad8b94cf3a20 |
| statistics/ |
