Resource

Id TF_ChIP-seq/ENCSR000BSQcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BSQ [biosample_summary="Homo sapiens Ishikawa" and target="EGR1"]
Description
Labels
  • accession: ENCSR000BSQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005718/
  • biosample_summary: Homo sapiens Ishikawa
  • date_created: 2013-11-06T05:08:00.949700+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BSQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: EGR1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BSQ float

TF_ChIP-seq_ENCSR000BSQ

TF_ChIP-seq ENCSR000BSQ [biosample_summary="Homo sapiens Ishikawa" and target="EGR1"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BSQ [5.76, 533]
n
3,186,217
mean
41.1
sd
37.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 31862170.10% 12476
chr1 323433 0.13% 1271
chr2 225560 0.09% 883
chr3 177109 0.09% 698
chr4 104895 0.06% 405
chr5 137471 0.08% 536
chr6 156657 0.09% 613
chr7 150758 0.09% 591
chr8 109874 0.08% 431
chr9 139558 0.10% 557
chr10 157966 0.12% 625
chr11 159297 0.12% 616
chr12 193065 0.14% 766
chr13 64526 0.06% 254
chr14 97029 0.09% 376
chr15 86359 0.08% 335
chr16 150291 0.17% 592
chr17 207713 0.25% 812
chr18 54300 0.07% 207
chr19 231525 0.39% 910
chr20 89212 0.14% 340
chr21 33993 0.07% 134
chr22 88754 0.17% 344
chrX 46872 0.03% 180
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 12476 1 491 255.39 284
global segment-length histogram

Files

Filename Size md5
ENCFF943XDP.bed.gz 204.15 KB 796364a60715ac5c2834b2f0a9c87955
ENCFF943XDP.tabix.bed.gz 145.88 KB ef23065429f41ab512863390b9738630
ENCFF943XDP.tabix.bed.gz.tbi 89.03 KB 59dc7970255749b727d7d3656d9d3cd1
genomic_resource.yaml 1.56 KB a3d41de09c28424eabf4ad8b94cf3a20
statistics/