Resource

Id TF_ChIP-seq/ENCSR000BSFcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BSF [biosample_summary="Homo sapiens HCT116" and target="SP1"]
Description
Labels
  • accession: ENCSR000BSF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002824/
  • biosample_summary: Homo sapiens HCT116
  • date_created: 2013-12-19T20:51:47.570447+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BSF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: SP1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BSF float

TF_ChIP-seq_ENCSR000BSF

TF_ChIP-seq ENCSR000BSF [biosample_summary="Homo sapiens HCT116" and target="SP1"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BSF [5.82, 516]
n
11,716,566
mean
62.2
sd
55.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 117165660.36% 33944
chr1 1169114 0.47% 3459
chr2 978467 0.40% 2839
chr3 737000 0.37% 2135
chr4 656798 0.35% 1900
chr5 561683 0.31% 1604
chr6 818698 0.48% 2407
chr7 596222 0.37% 1689
chr8 548431 0.38% 1626
chr9 415652 0.30% 1206
chr10 612707 0.46% 1770
chr11 566300 0.42% 1627
chr12 671170 0.50% 1959
chr13 189060 0.17% 532
chr14 327884 0.31% 962
chr15 316946 0.31% 871
chr16 361669 0.40% 1039
chr17 619547 0.74% 1780
chr18 201255 0.25% 590
chr19 566701 0.97% 1707
chr20 290641 0.45% 821
chr21 70449 0.15% 198
chr22 205409 0.40% 583
chrX 234327 0.15% 639
chrY 436 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33944 1 770 345.17 436
global segment-length histogram

Files

Filename Size md5
ENCFF600MKH.bed.gz 517.9 KB bcc3d0fff72583585f282f1a7270fc8e
ENCFF600MKH.tabix.bed.gz 394.57 KB f667153b6e0e21161acbe55640374d9c
ENCFF600MKH.tabix.bed.gz.tbi 175.9 KB 8a0502138478f425a1f55bd5aafb06c7
genomic_resource.yaml 2.05 KB c1f7e46e87a14ae609454c047906dae4
statistics/