Resource

Id TF_ChIP-seq/ENCSR000BSDcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BSD [biosample_summary="Homo sapiens HCT116" and target="CEBPB"]
Description
Labels
  • accession: ENCSR000BSD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002824/
  • biosample_summary: Homo sapiens HCT116
  • date_created: 2013-12-19T20:51:50.880645+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BSD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: CEBPB

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BSD float

TF_ChIP-seq_ENCSR000BSD
TF_ChIP-seq ENCSR000BSD [biosample_summary="Homo sapiens HCT116" and target="CEBPB"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BSD [5.55, 556]
n
6,547,210
mean
50.3
sd
51.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 65472100.20% 19548
chr1 653024 0.26% 1923
chr2 605362 0.25% 1822
chr3 497858 0.25% 1503
chr4 468677 0.25% 1398
chr5 371472 0.20% 1101
chr6 547907 0.32% 1657
chr7 363550 0.23% 1100
chr8 369701 0.25% 1129
chr9 249696 0.18% 724
chr10 355118 0.27% 1073
chr11 270905 0.20% 809
chr12 419707 0.31% 1255
chr13 115996 0.10% 337
chr14 171521 0.16% 512
chr15 156346 0.15% 440
chr16 140515 0.16% 419
chr17 225999 0.27% 681
chr18 131449 0.16% 399
chr19 87804 0.15% 264
chr20 143066 0.22% 422
chr21 34080 0.07% 96
chr22 59661 0.12% 172
chrX 107796 0.07% 312
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19548 3 550 334.93 416
global segment-length histogram

Files

Filename Size md5
ENCFF963FVR.bed.gz 311.78 KB 32d02c70bc1c1c193e66b59dff7b4719
ENCFF963FVR.tabix.bed.gz 227.6 KB 7dfe90e7fc9462e4f6360d2edf1f0a08
ENCFF963FVR.tabix.bed.gz.tbi 117.96 KB a5cbebc2b113ca82916b66dd9e17aaf4
genomic_resource.yaml 2.06 KB 9a728cf7e529b8e5a0e0092e2ea6c1cf
statistics/