Resource

Id TF_ChIP-seq/ENCSR000BSCcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BSC [biosample_summary="Homo sapiens HCT116" and target="SRF"]
Description
Labels
  • accession: ENCSR000BSC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002824/
  • biosample_summary: Homo sapiens HCT116
  • date_created: 2013-12-19T20:51:40.850343+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BSC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: SRF

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BSC float

TF_ChIP-seq_ENCSR000BSC
TF_ChIP-seq ENCSR000BSC [biosample_summary="Homo sapiens HCT116" and target="SRF"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BSC [5.62, 949]
n
4,235,533
mean
48.4
sd
57.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 42355330.13% 11842
chr1 460024 0.18% 1329
chr2 402654 0.17% 1124
chr3 288942 0.15% 803
chr4 253043 0.13% 719
chr5 219764 0.12% 622
chr6 312375 0.18% 880
chr7 219428 0.14% 601
chr8 240385 0.17% 697
chr9 164167 0.12% 453
chr10 229731 0.17% 645
chr11 198430 0.15% 561
chr12 266204 0.20% 733
chr13 65605 0.06% 165
chr14 117821 0.11% 322
chr15 105710 0.10% 285
chr16 103010 0.11% 289
chr17 171896 0.21% 475
chr18 70271 0.09% 195
chr19 121021 0.21% 341
chr20 91766 0.14% 244
chr21 18775 0.04% 48
chr22 49365 0.10% 139
chrX 65146 0.04% 172
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 11842 4 719 357.67 456
global segment-length histogram

Files

Filename Size md5
ENCFF502RNC.bed.gz 187.34 KB e176ff58cb133a661eb3abacb507c606
ENCFF502RNC.tabix.bed.gz 138.5 KB cc666a9f270a53b5446bdd1b90ce1e18
ENCFF502RNC.tabix.bed.gz.tbi 79.31 KB 7018887a61ea1e843147e1eff738d8fd
genomic_resource.yaml 2.05 KB b60abd9232834660480a7ea6928168a2
statistics/