Resource

Id TF_ChIP-seq/ENCSR000BSAcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BSA [biosample_summary="Homo sapiens HCT116" and target="JUND"]
Description
Labels
  • accession: ENCSR000BSA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002824/
  • biosample_summary: Homo sapiens HCT116
  • date_created: 2013-12-19T20:51:44.392677+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BSA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: JUND

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BSA float

TF_ChIP-seq_ENCSR000BSA

TF_ChIP-seq ENCSR000BSA [biosample_summary="Homo sapiens HCT116" and target="JUND"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BSA [5.42, 455]
n
8,418,287
mean
56.7
sd
49.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 84182870.26% 25874
chr1 844723 0.34% 2605
chr1_KI270713v1_random 1275 3.13% 6
chr2 725963 0.30% 2205
chr3 609488 0.31% 1898
chr4 527448 0.28% 1604
chr5 449167 0.25% 1356
chr6 637432 0.37% 1991
chr7 445107 0.28% 1370
chr8 443735 0.31% 1414
chr9 305747 0.22% 952
chr10 474162 0.35% 1480
chr11 375117 0.28% 1124
chr12 506993 0.38% 1574
chr13 157234 0.14% 460
chr14 219014 0.20% 676
chr15 215694 0.21% 662
chr16 216677 0.24% 650
chr17 358093 0.43% 1114
chr18 162695 0.20% 478
chr19 196864 0.34% 635
chr20 198237 0.31% 596
chr21 49207 0.11% 145
chr22 111938 0.22% 327
chrM 7384 44.57% 31
chrUn_KI270466v1 396 32.12% 1
chrX 178497 0.11% 520
3340 contigs with no values (186245953 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25874 1 746 325.36 396
global segment-length histogram

Files

Filename Size md5
ENCFF998KDQ.bed.gz 413.35 KB 74b7f5b3689916cf722046e595380c61
ENCFF998KDQ.tabix.bed.gz 302.09 KB ead34abc09a9ca215a194f4a8efd8ab9
ENCFF998KDQ.tabix.bed.gz.tbi 150.0 KB 38a8420e0a10ba5893d7616a8e96fd01
genomic_resource.yaml 2.02 KB 0dbc328dfb66c77f5aca4ab31f255ceb
statistics/