Resource
| Id | TF_ChIP-seq/ENCSR000BSA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BSA [biosample_summary="Homo sapiens HCT116" and target="JUND"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF998KDQ|/files/ENCFF998KDQ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN662HFU|/analyses/ENCAN662HFU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF073LHY|/files/ENCFF073LHY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19868781 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUND-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BSA | float |
TF_ChIP-seq_ENCSR000BSA |
TF_ChIP-seq ENCSR000BSA [biosample_summary="Homo sapiens HCT116" and target="JUND"]
|
![]() |
[5.42, 455] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8418287 | 0.26% | 25874 |
| chr1 | 844723 | 0.34% | 2605 |
| chr1_KI270713v1_random | 1275 | 3.13% | 6 |
| chr2 | 725963 | 0.30% | 2205 |
| chr3 | 609488 | 0.31% | 1898 |
| chr4 | 527448 | 0.28% | 1604 |
| chr5 | 449167 | 0.25% | 1356 |
| chr6 | 637432 | 0.37% | 1991 |
| chr7 | 445107 | 0.28% | 1370 |
| chr8 | 443735 | 0.31% | 1414 |
| chr9 | 305747 | 0.22% | 952 |
| chr10 | 474162 | 0.35% | 1480 |
| chr11 | 375117 | 0.28% | 1124 |
| chr12 | 506993 | 0.38% | 1574 |
| chr13 | 157234 | 0.14% | 460 |
| chr14 | 219014 | 0.20% | 676 |
| chr15 | 215694 | 0.21% | 662 |
| chr16 | 216677 | 0.24% | 650 |
| chr17 | 358093 | 0.43% | 1114 |
| chr18 | 162695 | 0.20% | 478 |
| chr19 | 196864 | 0.34% | 635 |
| chr20 | 198237 | 0.31% | 596 |
| chr21 | 49207 | 0.11% | 145 |
| chr22 | 111938 | 0.22% | 327 |
| chrM | 7384 | 44.57% | 31 |
| chrUn_KI270466v1 | 396 | 32.12% | 1 |
| chrX | 178497 | 0.11% | 520 |
| 3340 contigs with no values (186245953 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 25874 | 1 | 746 | 325.36 | 396 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF998KDQ.bed.gz | 413.35 KB | 74b7f5b3689916cf722046e595380c61 |
| ENCFF998KDQ.tabix.bed.gz | 302.09 KB | ead34abc09a9ca215a194f4a8efd8ab9 |
| ENCFF998KDQ.tabix.bed.gz.tbi | 150.0 KB | 38a8420e0a10ba5893d7616a8e96fd01 |
| genomic_resource.yaml | 2.02 KB | 0dbc328dfb66c77f5aca4ab31f255ceb |
| statistics/ |
