Resource
| Id | TF_ChIP-seq/ENCSR000BRZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BRZ [biosample_summary="Homo sapiens HCT116" and target="EGR1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN541DZY|/analyses/ENCAN541DZY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF329JMS|/files/ENCFF329JMS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10280579 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EGR1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BRZ | float |
TF_ChIP-seq_ENCSR000BRZ |
TF_ChIP-seq ENCSR000BRZ [biosample_summary="Homo sapiens HCT116" and target="EGR1"]
|
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[4.48, 728] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5869087 | 0.18% | 17376 |
| chr1 | 639627 | 0.26% | 1905 |
| chr2 | 474134 | 0.20% | 1412 |
| chr3 | 352244 | 0.18% | 1048 |
| chr4 | 265819 | 0.14% | 763 |
| chr5 | 266835 | 0.15% | 786 |
| chr6 | 381910 | 0.22% | 1148 |
| chr7 | 301802 | 0.19% | 909 |
| chr8 | 244754 | 0.17% | 713 |
| chr9 | 197596 | 0.14% | 576 |
| chr10 | 291994 | 0.22% | 891 |
| chr11 | 298779 | 0.22% | 893 |
| chr12 | 334909 | 0.25% | 1003 |
| chr13 | 99119 | 0.09% | 288 |
| chr14 | 167384 | 0.16% | 495 |
| chr15 | 141525 | 0.14% | 405 |
| chr16 | 201328 | 0.22% | 602 |
| chr17 | 361041 | 0.43% | 1095 |
| chr18 | 82134 | 0.10% | 238 |
| chr19 | 376668 | 0.64% | 1103 |
| chr20 | 142608 | 0.22% | 404 |
| chr21 | 32394 | 0.07% | 95 |
| chr22 | 116918 | 0.23% | 328 |
| chrX | 97565 | 0.06% | 276 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 17376 | 1 | 623 | 337.77 | 338.5 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF822VKJ.bed.gz | 263.97 KB | 4b9821a3e4f6b7ff9786a9a9558dc7e7 |
| ENCFF822VKJ.tabix.bed.gz | 201.94 KB | e055800d8fc912553525458957ad5a20 |
| ENCFF822VKJ.tabix.bed.gz.tbi | 102.04 KB | 1cf5859664fedcb4cc2c517d7ff132ab |
| genomic_resource.yaml | 1.84 KB | b89f514d255c6b6d9f67b31e2263ca3e |
| statistics/ |
