Resource
| Id | TF_ChIP-seq/ENCSR000BRY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BRY [biosample_summary="Homo sapiens H1" and target="TEAD4"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN298JNL|/analyses/ENCAN298JNL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN298JNL|/analyses/ENCAN298JNL/} has in progress subobject document {b11d7315-8ff0-41ef-bdb7-71a6700a8b23|/documents/b11d7315-8ff0-41ef-bdb7-71a6700a8b23/} audit_warning: Processed alignments file {ENCFF345FFX|/files/ENCFF345FFX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14482948 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TEAD4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BRY | float |
TF_ChIP-seq_ENCSR000BRY |
TF_ChIP-seq ENCSR000BRY [biosample_summary="Homo sapiens H1" and target="TEAD4"]
|
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[5.06, 431] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5792702 | 0.18% | 25253 |
| chr1 | 554860 | 0.22% | 2425 |
| chr2 | 477271 | 0.20% | 2075 |
| chr3 | 398981 | 0.20% | 1747 |
| chr4 | 304447 | 0.16% | 1333 |
| chr5 | 347482 | 0.19% | 1508 |
| chr6 | 371900 | 0.22% | 1621 |
| chr7 | 327917 | 0.21% | 1428 |
| chr8 | 270041 | 0.19% | 1187 |
| chr9 | 246285 | 0.18% | 1086 |
| chr10 | 273319 | 0.20% | 1199 |
| chr11 | 309955 | 0.23% | 1355 |
| chr12 | 282283 | 0.21% | 1239 |
| chr13 | 155599 | 0.14% | 674 |
| chr14 | 177718 | 0.17% | 766 |
| chr15 | 179933 | 0.18% | 776 |
| chr16 | 189546 | 0.21% | 820 |
| chr17 | 228854 | 0.27% | 991 |
| chr18 | 122120 | 0.15% | 537 |
| chr19 | 184078 | 0.31% | 796 |
| chr20 | 142771 | 0.22% | 620 |
| chr21 | 51906 | 0.11% | 229 |
| chr22 | 96658 | 0.19% | 411 |
| chrX | 96706 | 0.06% | 421 |
| chrY | 2072 | <0.01% | 9 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 25253 | 7 | 483 | 229.39 | 244 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF885PQR.bed.gz | 382.34 KB | 4e0d0dd4f67b5213c0a9a9112a9972ef |
| ENCFF885PQR.tabix.bed.gz | 294.07 KB | c623dcbba4e45c2337198f2a026f332e |
| ENCFF885PQR.tabix.bed.gz.tbi | 184.62 KB | 266e5732fcf262635942d3d6086714f7 |
| genomic_resource.yaml | 2.05 KB | 9b00643434deffe9862e52867c39bc43 |
| statistics/ |
