Resource

Id TF_ChIP-seq/ENCSR000BRYcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BRY [biosample_summary="Homo sapiens H1" and target="TEAD4"]
Description
Labels
  • accession: ENCSR000BRY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003042/
  • biosample_summary: Homo sapiens H1
  • date_created: 2013-12-12T06:33:48.920343+00:00
  • date_released: 2012-09-10
  • doi: 10.17989/ENCSR000BRY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: TEAD4

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BRY float

TF_ChIP-seq_ENCSR000BRY

TF_ChIP-seq ENCSR000BRY [biosample_summary="Homo sapiens H1" and target="TEAD4"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BRY [5.06, 431]
n
5,792,702
mean
43
sd
36.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 57927020.18% 25253
chr1 554860 0.22% 2425
chr2 477271 0.20% 2075
chr3 398981 0.20% 1747
chr4 304447 0.16% 1333
chr5 347482 0.19% 1508
chr6 371900 0.22% 1621
chr7 327917 0.21% 1428
chr8 270041 0.19% 1187
chr9 246285 0.18% 1086
chr10 273319 0.20% 1199
chr11 309955 0.23% 1355
chr12 282283 0.21% 1239
chr13 155599 0.14% 674
chr14 177718 0.17% 766
chr15 179933 0.18% 776
chr16 189546 0.21% 820
chr17 228854 0.27% 991
chr18 122120 0.15% 537
chr19 184078 0.31% 796
chr20 142771 0.22% 620
chr21 51906 0.11% 229
chr22 96658 0.19% 411
chrX 96706 0.06% 421
chrY 2072 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25253 7 483 229.39 244
global segment-length histogram

Files

Filename Size md5
ENCFF885PQR.bed.gz 382.34 KB 4e0d0dd4f67b5213c0a9a9112a9972ef
ENCFF885PQR.tabix.bed.gz 294.07 KB c623dcbba4e45c2337198f2a026f332e
ENCFF885PQR.tabix.bed.gz.tbi 184.62 KB 266e5732fcf262635942d3d6086714f7
genomic_resource.yaml 2.05 KB 9b00643434deffe9862e52867c39bc43
statistics/