Resource

Id TF_ChIP-seq/ENCSR000BRUcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BRU [biosample_summary="Homo sapiens GM12878" and target="FOXM1"]
Description
Labels
  • accession: ENCSR000BRU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T16:52:37.145191-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BRU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: FOXM1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BRU float

TF_ChIP-seq_ENCSR000BRU
TF_ChIP-seq ENCSR000BRU [biosample_summary="Homo sapiens GM12878" and target="FOXM1"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BRU [32.9, 370]
n
10,133,142
mean
54.9
sd
30.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 101331420.31% 23950
chr1 969386 0.39% 2240
chr2 818634 0.34% 1947
chr3 706128 0.36% 1665
chr4 457680 0.24% 1093
chr5 583716 0.32% 1377
chr6 757245 0.44% 1807
chr7 513055 0.32% 1211
chr8 457404 0.32% 1100
chr9 369385 0.27% 866
chr10 474144 0.35% 1113
chr11 510043 0.38% 1192
chr12 578871 0.43% 1395
chr13 243462 0.21% 579
chr14 364381 0.34% 865
chr15 300411 0.29% 717
chr16 338154 0.37% 801
chr17 450753 0.54% 1076
chr18 191409 0.24% 459
chr19 375531 0.64% 873
chr20 232632 0.36% 540
chr21 110364 0.24% 269
chr22 148931 0.29% 337
chrX 181423 0.12% 428
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23950 2 1508 423.1 520
global segment-length histogram

Files

Filename Size md5
ENCFF002CGZ.bed.gz 438.91 KB 674ddee7a15de0c3fae465c7685af136
ENCFF002CGZ.tabix.bed.gz 365.52 KB ecde6d497350b4a04ce3f8c79bfaae5a
ENCFF002CGZ.tabix.bed.gz.tbi 143.73 KB 33a473bf7d997cc02e38b9e60bbac3a2
genomic_resource.yaml 1.48 KB 386075cf6834469a651419d7abf6abec
statistics/