Resource
| Id | TF_ChIP-seq/ENCSR000BRT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BRT [biosample_summary="Homo sapiens K562" and target="CBX3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN559WIS|/analyses/ENCAN559WIS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF386ZWO|/files/ENCFF386ZWO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.44 and a self consistency ratio of 2.52. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BRT | float |
TF_ChIP-seq_ENCSR000BRT |
TF_ChIP-seq ENCSR000BRT [biosample_summary="Homo sapiens K562" and target="CBX3"]
|
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[8.24, 343] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8926485 | 0.28% | 27231 |
| chr1 | 1238989 | 0.50% | 3822 |
| chr2 | 670905 | 0.28% | 2061 |
| chr3 | 556918 | 0.28% | 1709 |
| chr4 | 310323 | 0.16% | 939 |
| chr5 | 425683 | 0.23% | 1317 |
| chr6 | 789831 | 0.46% | 2458 |
| chr7 | 709944 | 0.45% | 2214 |
| chr8 | 343260 | 0.24% | 1034 |
| chr9 | 281148 | 0.20% | 854 |
| chr10 | 362640 | 0.27% | 1086 |
| chr11 | 488743 | 0.36% | 1500 |
| chr12 | 427286 | 0.32% | 1279 |
| chr13 | 64390 | 0.06% | 199 |
| chr14 | 130759 | 0.12% | 382 |
| chr15 | 234337 | 0.23% | 729 |
| chr16 | 335201 | 0.37% | 999 |
| chr17 | 353876 | 0.43% | 1048 |
| chr18 | 103911 | 0.13% | 314 |
| chr19 | 546925 | 0.93% | 1639 |
| chr20 | 190555 | 0.30% | 562 |
| chr21 | 89433 | 0.19% | 281 |
| chr22 | 134873 | 0.27% | 401 |
| chrX | 136555 | 0.09% | 404 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 27231 | 1 | 810 | 327.81 | 430 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF386ZWO.bed.gz | 451.81 KB | c74490c82289504baef23da490560cd4 |
| ENCFF386ZWO.tabix.bed.gz | 314.74 KB | 17691a4e96c22120f92371927c081fef |
| ENCFF386ZWO.tabix.bed.gz.tbi | 148.92 KB | 38f6a1e56854a8c45f66ed4d17b7c0d3 |
| genomic_resource.yaml | 1.87 KB | 2fffdc086f3b7b461a9e32c66b41c855 |
| statistics/ |
