Resource
| Id | TF_ChIP-seq/ENCSR000BRQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BRQ [biosample_summary="Homo sapiens K562" and target="CEBPB"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN203IJU|/analyses/ENCAN203IJU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN203IJU|/analyses/ENCAN203IJU/} has in progress subobject document {06964946-b518-427e-9490-81b8966ee0c4|/documents/06964946-b518-427e-9490-81b8966ee0c4/} audit_not_compliant: Processed alignments file {ENCFF060DRK|/files/ENCFF060DRK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 5279535 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CEBPB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF022KBK|/files/ENCFF022KBK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.63 and a self consistency ratio of 4.09. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BRQ | float |
TF_ChIP-seq_ENCSR000BRQ |
TF_ChIP-seq ENCSR000BRQ [biosample_summary="Homo sapiens K562" and target="CEBPB"]
|
 |
[4.63, 615] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7569532 | 0.24% | 28011 |
| chr1 | 967153 | 0.39% | 3575 |
| chr2 | 606816 | 0.25% | 2242 |
| chr3 | 494840 | 0.25% | 1829 |
| chr4 | 330662 | 0.17% | 1226 |
| chr5 | 391805 | 0.22% | 1440 |
| chr6 | 669260 | 0.39% | 2486 |
| chr7 | 539195 | 0.34% | 2003 |
| chr8 | 316674 | 0.22% | 1169 |
| chr9 | 244592 | 0.18% | 906 |
| chr10 | 322159 | 0.24% | 1201 |
| chr11 | 378601 | 0.28% | 1394 |
| chr12 | 376369 | 0.28% | 1380 |
| chr13 | 96681 | 0.08% | 359 |
| chr14 | 139098 | 0.13% | 509 |
| chr15 | 220942 | 0.22% | 824 |
| chr16 | 236466 | 0.26% | 860 |
| chr17 | 308855 | 0.37% | 1141 |
| chr18 | 122669 | 0.15% | 465 |
| chr19 | 268391 | 0.46% | 1001 |
| chr20 | 160228 | 0.25% | 598 |
| chr21 | 85539 | 0.18% | 311 |
| chr22 | 120211 | 0.24% | 436 |
| chrX | 172326 | 0.11% | 656 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 28011 | 1 | 623 | 270.23 | 320 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF022KBK.bed.gz | 423.77 KB | 484cc43a6ae9ea4be593fb1aa4157e3c |
| ENCFF022KBK.tabix.bed.gz | 325.83 KB | 4fde2f23bacf66e7dbe1fa9366b131d5 |
| ENCFF022KBK.tabix.bed.gz.tbi | 171.38 KB | 5351b518d003bef6c1ec467faf4baf54 |
| genomic_resource.yaml | 2.61 KB | 68a2c7b32bf6cda29f61f0a112386f83 |
| statistics/ |