Resource

Id TF_ChIP-seq/ENCSR000BRPcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BRP [biosample_summary="Homo sapiens HepG2" and target="TEAD4"]
Description
Labels
  • accession: ENCSR000BRP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001187/
  • biosample_summary: Homo sapiens HepG2
  • date_created: 2013-09-13T16:01:28.806968-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BRP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: TEAD4

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BRP float

TF_ChIP-seq_ENCSR000BRP

TF_ChIP-seq ENCSR000BRP [biosample_summary="Homo sapiens HepG2" and target="TEAD4"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BRP [25.6, 360]
n
5,772,537
mean
49.5
sd
34.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 57725370.18% 15493
chr1 483087 0.19% 1291
chr2 746211 0.31% 2010
chr3 376874 0.19% 1014
chr4 229665 0.12% 613
chr5 257696 0.14% 693
chr6 508965 0.30% 1375
chr7 281779 0.18% 770
chr8 213905 0.15% 582
chr9 216652 0.16% 569
chr10 250664 0.19% 671
chr11 234594 0.17% 627
chr12 252770 0.19% 682
chr13 81484 0.07% 210
chr14 214770 0.20% 589
chr15 128217 0.13% 340
chr16 259881 0.29% 684
chr17 323015 0.39% 871
chr18 107449 0.13% 289
chr19 154435 0.26% 399
chr20 231754 0.36% 626
chr21 46501 0.10% 127
chr22 89252 0.18% 241
chrX 80589 0.05% 214
chrY 2328 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 15493 1 823 372.59 440
global segment-length histogram

Files

Filename Size md5
ENCFF002CLG.bed.gz 291.74 KB 4fedf810164ae7df7dd049dca4a257aa
ENCFF002CLG.tabix.bed.gz 237.5 KB 280fd8700d2e52757f9d22117d044d53
ENCFF002CLG.tabix.bed.gz.tbi 109.4 KB f989eddce8b4162f3385a5737c527f60
genomic_resource.yaml 1.47 KB 3880466161aaf831794163f4b673f147
statistics/