Resource
| Id | TF_ChIP-seq/ENCSR000BRH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BRH [biosample_summary="Homo sapiens GM12878" and target="MTA3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN992QDM|/analyses/ENCAN992QDM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF202XQV|/files/ENCFF202XQV/}, {ENCFF457WBH|/files/ENCFF457WBH/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.33 and a self consistency ratio of 3.57. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF413VUC|/files/ENCFF413VUC/}, {ENCFF611WSJ|/files/ENCFF611WSJ/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.33 and a self consistency ratio of 3.57. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BRH | float |
TF_ChIP-seq_ENCSR000BRH |
TF_ChIP-seq ENCSR000BRH [biosample_summary="Homo sapiens GM12878" and target="MTA3"]
|
 |
[11.5, 398] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9217277 | 0.29% | 21744 |
| chr1 | 893097 | 0.36% | 2143 |
| chr2 | 731274 | 0.30% | 1714 |
| chr3 | 647369 | 0.33% | 1513 |
| chr4 | 385803 | 0.20% | 875 |
| chr5 | 507411 | 0.28% | 1169 |
| chr6 | 723787 | 0.42% | 1708 |
| chr7 | 393672 | 0.25% | 904 |
| chr8 | 386879 | 0.27% | 915 |
| chr9 | 347458 | 0.25% | 859 |
| chr10 | 408115 | 0.31% | 988 |
| chr11 | 462432 | 0.34% | 1090 |
| chr12 | 532056 | 0.40% | 1243 |
| chr13 | 200386 | 0.18% | 445 |
| chr14 | 328137 | 0.31% | 791 |
| chr15 | 311596 | 0.31% | 773 |
| chr16 | 323717 | 0.36% | 777 |
| chr17 | 475795 | 0.57% | 1115 |
| chr18 | 153936 | 0.19% | 343 |
| chr19 | 373210 | 0.64% | 894 |
| chr20 | 223391 | 0.35% | 545 |
| chr21 | 110120 | 0.24% | 267 |
| chr22 | 162802 | 0.32% | 365 |
| chrX | 134834 | 0.09% | 308 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 21744 | 1 | 3256 | 423.9 | 415 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF413VUC.bed.gz | 315.37 KB | 986211e162ebe80002d15d053f4e37f8 |
| ENCFF413VUC.tabix.bed.gz | 250.58 KB | fcaaa41063ca97e8fdf2368b60a8e6a3 |
| ENCFF413VUC.tabix.bed.gz.tbi | 102.18 KB | 80dd41ff9cd5807d9306647f60129622 |
| genomic_resource.yaml | 2.48 KB | 3cca2808f08c5dada1a7c3c5b7d2fa4c |
| statistics/ |