Resource

Id TF_ChIP-seq/ENCSR000BRGcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BRG [biosample_summary="Homo sapiens GM12878" and target="EGR1"]
Description
Labels
  • accession: ENCSR000BRG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T16:02:29.946904-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BRG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: EGR1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BRG float

TF_ChIP-seq_ENCSR000BRG
TF_ChIP-seq ENCSR000BRG [biosample_summary="Homo sapiens GM12878" and target="EGR1"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BRG [2.77, 254]
n
709,268
mean
27.7
sd
21.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 7092680.02% 2789
chr1 68844 0.03% 266
chr2 43428 0.02% 179
chr3 43303 0.02% 167
chr4 21034 0.01% 88
chr5 37736 0.02% 152
chr6 42122 0.02% 164
chr7 31891 0.02% 127
chr8 21522 0.01% 83
chr9 26562 0.02% 108
chr10 28586 0.02% 111
chr11 40323 0.03% 161
chr12 35220 0.03% 133
chr13 13854 0.01% 55
chr14 21591 0.02% 86
chr15 20465 0.02% 77
chr16 33953 0.04% 130
chr17 49388 0.06% 191
chr18 9653 0.01% 37
chr19 56630 0.10% 228
chr20 21643 0.03% 85
chr21 7387 0.02% 28
chr22 21126 0.04% 80
chrX 13007 0.01% 53
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 2789 14 284 254.31 270
global segment-length histogram

Files

Filename Size md5
ENCFF618EFD.bed.gz 47.79 KB 5086b8288dcbb4e9f5152cf6c7338a68
ENCFF618EFD.tabix.bed.gz 33.32 KB cae6c528fe71c22a1e4b64cac1d21fac
ENCFF618EFD.tabix.bed.gz.tbi 29.85 KB 734241befea874d85a52b7215e792fe2
genomic_resource.yaml 1.85 KB a687c58f57f85ae8ea783268e2d7818e
statistics/