Resource
| Id | TF_ChIP-seq/ENCSR000BQM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BQM [biosample_summary="Homo sapiens GM12878" and target="PML"] |
| Description |
status: archived biological_replicates: summary: output_type: optimal IDR thresholded peaks audit_internal_action: derived_from is a list of files that were used to create a given file; for example, fastq file(s) will appear in the derived_from list of an alignments file. Processed file {ENCFF002CHM|/files/ENCFF002CHM/} is missing the requisite file specification in its derived_from list. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BQM | float |
TF_ChIP-seq_ENCSR000BQM |
TF_ChIP-seq ENCSR000BQM [biosample_summary="Homo sapiens GM12878" and target="PML"]
|
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[41, 716] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8081746 | 0.25% | 17893 |
| chr1 | 785006 | 0.32% | 1780 |
| chr2 | 597273 | 0.25% | 1373 |
| chr3 | 505919 | 0.26% | 1080 |
| chr4 | 324017 | 0.17% | 699 |
| chr5 | 429535 | 0.24% | 957 |
| chr6 | 595622 | 0.35% | 1275 |
| chr7 | 394787 | 0.25% | 854 |
| chr8 | 320061 | 0.22% | 684 |
| chr9 | 300447 | 0.22% | 674 |
| chr10 | 336180 | 0.25% | 734 |
| chr11 | 401973 | 0.30% | 925 |
| chr12 | 455165 | 0.34% | 1008 |
| chr13 | 164902 | 0.14% | 358 |
| chr14 | 289893 | 0.27% | 666 |
| chr15 | 246540 | 0.24% | 539 |
| chr16 | 305051 | 0.34% | 690 |
| chr17 | 420012 | 0.50% | 933 |
| chr18 | 136717 | 0.17% | 293 |
| chr19 | 473427 | 0.81% | 1102 |
| chr20 | 186189 | 0.29% | 404 |
| chr21 | 96366 | 0.21% | 196 |
| chr22 | 150206 | 0.30% | 335 |
| chrX | 166458 | 0.11% | 334 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 17893 | 1 | 5013 | 451.67 | 426 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF002CHM.bed.gz | 334.16 KB | 5d8b9a58042b39f6cf37b90df6bf035c |
| ENCFF002CHM.tabix.bed.gz | 272.2 KB | 6888ef5c20af3f6ac778c8b8668e7dd1 |
| ENCFF002CHM.tabix.bed.gz.tbi | 108.29 KB | 6ae39c27b2ccdd68821547af935a1ce3 |
| genomic_resource.yaml | 1.47 KB | fab5f9e24178d5dab182c33e2f222bca |
| statistics/ |
