Resource

Id TF_ChIP-seq/ENCSR000BNXcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BNX [biosample_summary="Homo sapiens HCT116" and target="YY1"]
Description
Labels
  • accession: ENCSR000BNX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002824/
  • biosample_summary: Homo sapiens HCT116
  • date_created: 2013-12-19T20:51:39.116647+00:00
  • date_released: 2011-07-18
  • doi: 10.17989/ENCSR000BNX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: YY1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BNX float

TF_ChIP-seq_ENCSR000BNX
TF_ChIP-seq ENCSR000BNX [biosample_summary="Homo sapiens HCT116" and target="YY1"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BNX [19.6, 401]
n
3,274,449
mean
45.6
sd
48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 32744490.10% 12767
chr1 370556 0.15% 1439
chr2 255164 0.11% 990
chr3 198123 0.10% 767
chr4 125070 0.07% 486
chr5 153938 0.08% 600
chr6 195403 0.11% 760
chr7 166271 0.10% 643
chr8 174652 0.12% 675
chr9 119292 0.09% 462
chr10 173305 0.13% 669
chr11 169981 0.13% 669
chr12 176022 0.13% 690
chr13 38581 0.03% 154
chr14 81080 0.08% 314
chr15 77912 0.08% 307
chr16 146088 0.16% 568
chr17 243176 0.29% 954
chr18 40251 0.05% 153
chr19 189453 0.32% 744
chr20 68204 0.11% 268
chr21 10448 0.02% 41
chr22 50989 0.10% 205
chrX 49950 0.03% 207
chrY 540 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 12767 7 735 256.48 270
global segment-length histogram

Files

Filename Size md5
ENCFF002CJV.bed.gz 241.61 KB 8434fd1558c6032c05a432d7ee3200d0
ENCFF002CJV.tabix.bed.gz 194.77 KB fbb5a58bafa64ca5b1299ce023cd9cdc
ENCFF002CJV.tabix.bed.gz.tbi 100.08 KB e12e183e0ffda8f6b00e4c4f3fb4011c
genomic_resource.yaml 1.47 KB 42da30bec6751f8f76ad450623378ebc
statistics/