Resource
| Id | TF_ChIP-seq/ENCSR000BMZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BMZ [biosample_summary="Homo sapiens HepG2" and target="ELF1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN280PBD|/analyses/ENCAN280PBD/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF319HSK|/files/ENCFF319HSK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15882243 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ELF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF081HCC|/files/ENCFF081HCC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17078668 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ELF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BMZ | float |
TF_ChIP-seq_ENCSR000BMZ |
TF_ChIP-seq ENCSR000BMZ [biosample_summary="Homo sapiens HepG2" and target="ELF1"]
|
 |
[4.47, 502] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5543346 | 0.17% | 22589 |
| chr1 | 497113 | 0.20% | 2026 |
| chr2 | 534504 | 0.22% | 2178 |
| chr3 | 282119 | 0.14% | 1143 |
| chr4 | 164045 | 0.09% | 668 |
| chr5 | 208196 | 0.11% | 839 |
| chr6 | 358927 | 0.21% | 1455 |
| chr7 | 228665 | 0.14% | 942 |
| chr8 | 180923 | 0.12% | 738 |
| chr9 | 204207 | 0.15% | 835 |
| chr10 | 212401 | 0.16% | 863 |
| chr11 | 259383 | 0.19% | 1070 |
| chr12 | 250817 | 0.19% | 1035 |
| chr13 | 83314 | 0.07% | 347 |
| chr14 | 202636 | 0.19% | 826 |
| chr15 | 155010 | 0.15% | 642 |
| chr16 | 334426 | 0.37% | 1351 |
| chr17 | 407115 | 0.49% | 1643 |
| chr18 | 85613 | 0.11% | 337 |
| chr19 | 330544 | 0.56% | 1373 |
| chr20 | 288938 | 0.45% | 1160 |
| chr21 | 54223 | 0.12% | 218 |
| chr22 | 131455 | 0.26% | 535 |
| chrX | 88046 | 0.06% | 362 |
| chrY | 726 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 22589 | 1 | 724 | 245.4 | 276 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF747CHL.bed.gz | 355.23 KB | 6cf30a6eafb808ec9250617a5b968d49 |
| ENCFF747CHL.tabix.bed.gz | 262.94 KB | e5b37fc3dd13ac5fae560b3396fa715c |
| ENCFF747CHL.tabix.bed.gz.tbi | 140.03 KB | 5f5dc3aa5f72096ac4fff8d22f9e9cb9 |
| genomic_resource.yaml | 2.33 KB | 201fbcedcbe1b93c2a45c22769fef587 |
| statistics/ |