Resource
| Id | TF_ChIP-seq/ENCSR000BKF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BKF [biosample_summary="Homo sapiens K562" and target="ZBTB33"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN804EQY|/analyses/ENCAN804EQY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN804EQY|/analyses/ENCAN804EQY/} has in progress subobject document {a634758c-7f00-4ae0-81b3-05622d85dea3|/documents/a634758c-7f00-4ae0-81b3-05622d85dea3/} audit_warning: Processed alignments file {ENCFF953TQL|/files/ENCFF953TQL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19068431 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB33-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF866OZI|/files/ENCFF866OZI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13516538 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB33-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF953TQL|/files/ENCFF953TQL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.79. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF953TQL|/files/ENCFF953TQL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.60. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BKF | float |
TF_ChIP-seq_ENCSR000BKF |
TF_ChIP-seq ENCSR000BKF [biosample_summary="Homo sapiens K562" and target="ZBTB33"]
|
 |
[4.85, 516] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 772417 | 0.02% | 3386 |
| chr1 | 91185 | 0.04% | 406 |
| chr2 | 39730 | 0.02% | 177 |
| chr3 | 33462 | 0.02% | 147 |
| chr4 | 25091 | 0.01% | 110 |
| chr5 | 34089 | 0.02% | 152 |
| chr6 | 58458 | 0.03% | 259 |
| chr7 | 50206 | 0.03% | 215 |
| chr8 | 23582 | 0.02% | 107 |
| chr9 | 22372 | 0.02% | 95 |
| chr10 | 27670 | 0.02% | 119 |
| chr11 | 38049 | 0.03% | 166 |
| chr12 | 33928 | 0.03% | 149 |
| chr13 | 23135 | 0.02% | 101 |
| chr14 | 15623 | 0.01% | 68 |
| chr15 | 21711 | 0.02% | 96 |
| chr16 | 40471 | 0.04% | 178 |
| chr17 | 47377 | 0.06% | 206 |
| chr18 | 9855 | 0.01% | 42 |
| chr19 | 60639 | 0.10% | 262 |
| chr20 | 16008 | 0.02% | 71 |
| chr21 | 8968 | 0.02% | 38 |
| chr22 | 34290 | 0.07% | 148 |
| chrX | 16518 | 0.01% | 74 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 3386 | 5 | 385 | 228.12 | 240 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF146GZZ.bed.gz | 60.55 KB | 8ac0ef9bb5256371dae70c5c42031e27 |
| ENCFF146GZZ.tabix.bed.gz | 40.62 KB | 62a045c157b1c8860e9dace94b9e4f9b |
| ENCFF146GZZ.tabix.bed.gz.tbi | 35.29 KB | becc63db72d5f7f9c7ba7315476fb758 |
| genomic_resource.yaml | 3.88 KB | b311a99976bc821f9ec8c9c0e4590233 |
| statistics/ |