Resource

Id TF_ChIP-seq/ENCSR000BJPcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BJP [biosample_summary="Homo sapiens PFSK-1" and target="REST"]
Description
Labels
  • accession: ENCSR000BJP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005234/
  • biosample_summary: Homo sapiens PFSK-1
  • date_created: 2013-12-12T06:29:12.828849+00:00
  • date_released: 2011-07-18
  • doi: 10.17989/ENCSR000BJP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: REST

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BJP float

TF_ChIP-seq_ENCSR000BJP
TF_ChIP-seq ENCSR000BJP [biosample_summary="Homo sapiens PFSK-1" and target="REST"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BJP [28.2, 1.17e+03]
n
3,895,355
mean
178
sd
262

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 38953550.12% 11487
chr1 437469 0.18% 1272
chr2 277834 0.11% 825
chr3 181914 0.09% 550
chr4 178569 0.09% 533
chr5 232344 0.13% 676
chr6 253660 0.15% 750
chr7 171001 0.11% 516
chr8 237976 0.16% 701
chr9 112894 0.08% 335
chr10 158523 0.12% 470
chr11 280803 0.21% 816
chr12 236715 0.18% 701
chr13 50006 0.04% 157
chr14 60769 0.06% 187
chr15 127087 0.12% 363
chr16 131559 0.15% 396
chr17 222238 0.27% 643
chr18 98407 0.12% 296
chr19 166012 0.28% 464
chr20 132130 0.21% 388
chr21 28185 0.06% 85
chr22 55096 0.11% 162
chrX 61755 0.04% 193
chrY 2409 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 11487 8 1032 339.11 370
global segment-length histogram

Files

Filename Size md5
ENCFF002CNE.bed.gz 284.57 KB 45465964c5600b97d486d93dc96588df
ENCFF002CNE.tabix.bed.gz 177.5 KB 3329e8d5ce6761af9ad865e6f4af5199
ENCFF002CNE.tabix.bed.gz.tbi 95.51 KB a7224b2a857c83da3603545e6d98f2f8
genomic_resource.yaml 1.47 KB 329853ff898886a57a0ada3c8871d24b
statistics/