Resource
| Id | TF_ChIP-seq/ENCSR000BJL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BJL [biosample_summary="Homo sapiens HepG2" and target="REST"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN205EQV|/analyses/ENCAN205EQV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN205EQV|/analyses/ENCAN205EQV/} has in progress subobject document {af208341-8e30-4dc8-9fc7-8b55c1431034|/documents/af208341-8e30-4dc8-9fc7-8b55c1431034/} audit_warning: Processed alignments file {ENCFF709XZV|/files/ENCFF709XZV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14356898 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REST-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF281XTY|/files/ENCFF281XTY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11306512 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REST-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value in the range 0 - 0.5 is poor complexity, 0.5 - 0.8 is moderate complexity, and > 0.8 high complexity. NRF value > 0.8 is recommended, but > 0.5 is acceptable. ENCODE processed alignments file {ENCFF281XTY|/files/ENCFF281XTY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with NRF value of 0.79. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BJL | float |
TF_ChIP-seq_ENCSR000BJL |
TF_ChIP-seq ENCSR000BJL [biosample_summary="Homo sapiens HepG2" and target="REST"]
|
 |
[28.1, 443] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 555039 | 0.02% | 2471 |
| chr1 | 50967 | 0.02% | 227 |
| chr2 | 39255 | 0.02% | 177 |
| chr3 | 27081 | 0.01% | 123 |
| chr4 | 13722 | 0.01% | 65 |
| chr5 | 27361 | 0.02% | 123 |
| chr6 | 26876 | 0.02% | 120 |
| chr7 | 25036 | 0.02% | 114 |
| chr8 | 24608 | 0.02% | 107 |
| chr9 | 22598 | 0.02% | 101 |
| chr10 | 26491 | 0.02% | 116 |
| chr11 | 28882 | 0.02% | 130 |
| chr12 | 27164 | 0.02% | 120 |
| chr13 | 8664 | 0.01% | 41 |
| chr14 | 14459 | 0.01% | 67 |
| chr15 | 17054 | 0.02% | 75 |
| chr16 | 33440 | 0.04% | 149 |
| chr17 | 30405 | 0.04% | 136 |
| chr18 | 10593 | 0.01% | 48 |
| chr19 | 40139 | 0.07% | 169 |
| chr20 | 32329 | 0.05% | 136 |
| chr21 | 3694 | 0.01% | 16 |
| chr22 | 17351 | 0.03% | 77 |
| chrX | 6528 | <0.01% | 31 |
| chrY | 342 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 2471 | 60 | 549 | 224.62 | 240 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF200SDQ.bed.gz | 44.89 KB | 3ac1f22e143e68ed9126b61bd7829a36 |
| ENCFF200SDQ.tabix.bed.gz | 30.64 KB | 2b2204c91502a1042f13bb421c950356 |
| ENCFF200SDQ.tabix.bed.gz.tbi | 29.05 KB | 797cece4ded2ee13f0636bf1018eb8f8 |
| genomic_resource.yaml | 3.11 KB | 5d533612a0870c7ca5b934eca88c04b6 |
| statistics/ |